View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_low_5 (Length: 397)
Name: NF13071_low_5
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 27455706 - 27455968
Alignment:
| Q |
17 |
tatatagaagaaaaaagcctctaaaattttatgttttgaaagctaaaacctatgacgcaagcacgatgacaatatttgattgcttgatgaagaatttgat |
116 |
Q |
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| T |
27455706 |
tatatagaagaaaaaaacctctaaaattttatgttttgaaagctaaaacctatgacgcaagcacgatgacaatatttgattgcttgatgaagaatttgat |
27455805 |
T |
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| Q |
117 |
tggctaacaattgacatcgtggcacataaaagtaaatagcagagtttgattggttaatgatagaaattgtgatggttatcgaatgcaaaatgagaat--a |
214 |
Q |
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| T |
27455806 |
tggctaacaattgacatcgtggcacatcaaagtaaatagcaaagtttgattggttaatgatagaaattgtgatggttatcgaatgcaaaatgagaataga |
27455905 |
T |
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| Q |
215 |
gtaagtcaatgaaattgaacacaaaaattaaaagtgtgattcaatacaatttatttcatgatt |
277 |
Q |
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| T |
27455906 |
gtaagtcaatgaaattgaatgcaaaaattaaaagtgtgattcaatacaatttatttcatgatt |
27455968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 275 - 380
Target Start/End: Original strand, 27456013 - 27456119
Alignment:
| Q |
275 |
attcaaattcaaatatgtatcaaatgtgaaaatatgagatgatgtggataagtgatcggacaatagtcaataagc-aagttatttacatgatgaggtgta |
373 |
Q |
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| T |
27456013 |
attcaaattcaaatatgtatcaaatgtgaaaatatgagatgatgtggataagcgatcggacaatagtcaataagcaaagttatttacatgatgaggtgta |
27456112 |
T |
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| Q |
374 |
cacgtgt |
380 |
Q |
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| T |
27456113 |
cacgtgt |
27456119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 33621494 - 33621678
Alignment:
| Q |
26 |
gaaaaaagcctctaaaattttatgttttgaaagctaaaacctatgacgcaagcacgatgacaatatttgattgcttgatgaagaatttgattggctaaca |
125 |
Q |
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||||||| || | ||||||||||||| |||| |||||||||||||| |||||||||| |||||||||||||| |||||| | ||||| |||||||| || |
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| T |
33621494 |
gaaaaaaacccccaaaattttatgttatgaatgctaaaacctatgatgcaagcacgacaacaatatttgattggttgatgcaaaatttaattggctagca |
33621593 |
T |
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| Q |
126 |
attgacatcgtggcacataaaagtaaatagcagagtttgattggttaatgatagaaattgtgatggttatcgaatgcaaaatgagaata |
214 |
Q |
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| T |
33621594 |
attgtcacggtgacacattagagtaaatagcaaagtttga----ctaatgataaaaattgtgatgtttatctaatgtaaaatgagaata |
33621678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 367
Target Start/End: Original strand, 30143745 - 30143836
Alignment:
| Q |
280 |
aattcaaatatgtatcaaatgtg--aaaatatgagatgatgtggataagtgatcggacaatagtcaataagcaagt--tatttacatgatga |
367 |
Q |
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| T |
30143745 |
aattctaatatttatcaaatgtgtgaaaatatgagataatgtggataagtgattaaaaaatagacaataagcaagttgtatttacatgatga |
30143836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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