View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_low_7 (Length: 355)
Name: NF13071_low_7
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 10263497 - 10263824
Alignment:
| Q |
18 |
gaattgagccgcggatgaacctaatccaacataatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggctccaatgcctttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10263497 |
gaattgagccgcggatgaacctaatccaacataatgctcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggctccaatgcctttg |
10263596 |
T |
|
| Q |
118 |
actttcctggaactaacatagccagcatcaacaaaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttccc |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |
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| T |
10263597 |
actttcctagaactaacatagccagcatcaacaaaagacttatccaaacatgtacaacattcataaagcacagcatcacttgcttcaccgctgatttccc |
10263696 |
T |
|
| Q |
218 |
aaaaaataacataatgtcctggttctttggataaatcaatgtagcttgtgtagtcaatcacttccattttctcctcagctaacaacttggacgatgtttc |
317 |
Q |
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| || |||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10263697 |
agaagataacatagtgtcctgggtcattggataaatcaatgtagctagtgtagtcaatcacttccattttctcctcagctaacatcttggacgatgtttc |
10263796 |
T |
|
| Q |
318 |
taccgatatttgtagatcattctctgtg |
345 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
10263797 |
gaccgatatttgtagatcattctctgtg |
10263824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 36 - 341
Target Start/End: Original strand, 10241544 - 10241849
Alignment:
| Q |
36 |
acctaatccaacataatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggctccaatgcctttgactttcctggaactaaca |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||| |
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| T |
10241544 |
acctaatccaacataatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggccgcaatacctttgacttttctagaactaaca |
10241643 |
T |
|
| Q |
136 |
tagccagcatcaacaaaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacataatgtc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10241644 |
tagccagcatcaacaaaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacataatgtc |
10241743 |
T |
|
| Q |
236 |
ctggttctttggataaatcaatgtagcttgtgtagtcaatcacttccattttctcctcagctaacaacttggacgatgtttctaccgatatttgtagatc |
335 |
Q |
| |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |||| | |||||| || |||| ||||| ||| |
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| T |
10241744 |
ctggttctttggataaatcaatgtagctagtatagtcaatcacttccattttctcttcagctaacaacatggaagctgtttccactgataattgtaaatc |
10241843 |
T |
|
| Q |
336 |
attctc |
341 |
Q |
| |
|
|||||| |
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|
| T |
10241844 |
attctc |
10241849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 10271669 - 10271968
Alignment:
| Q |
18 |
gaattgagccgcggatgaacctaatccaacataatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggctccaatgcctttg |
117 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
10271669 |
gaattgagccgcagatgctcctaatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttcaagggctccaatgcctttg |
10271768 |
T |
|
| Q |
118 |
actttcctggaactaacatagccagcatcaacaaaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttccc |
217 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |
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| T |
10271769 |
actttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcatcaagcacatcatcacttgcttcgccactgatttccc |
10271868 |
T |
|
| Q |
218 |
aaaaaataacataatgtcctggttctttggataaatcaatgtagcttgtgtagtcaatcacttccattttctcctcagctaacaacttggacgatgtttc |
317 |
Q |
| |
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| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | |||||| |
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| T |
10271869 |
agaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagtcaatcacttcaattttctcctcagctaacaacttggatgctgtttc |
10271968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 31 - 336
Target Start/End: Original strand, 10283170 - 10283475
Alignment:
| Q |
31 |
gatgaacctaatccaacataatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggctccaatgcctttgactttcctggaac |
130 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| |||||||||| ||| ||||| |||||||||||||||| | || ||||| || | || |||| |
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| T |
10283170 |
gatgcacctaatccaacataatgctcaagaatcttcatgaatgttcctctcctaacaactcggagttcaagggcttcgatagctttggctcttctagaac |
10283269 |
T |
|
| Q |
131 |
taacatagccagcatcaacaaaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacata |
230 |
Q |
| |
|
|||||| ||| |||| |||||| ||| || ||||| | ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| |||||||| |
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| T |
10283270 |
caacatatccaatatcagcaaaagtcttgtctaaacagctgcaacactcaccaagcacttcatcgcttgcttcgccattgatttcccaaaagataacata |
10283369 |
T |
|
| Q |
231 |
atgtcctggttctttggataaatcaatgtagcttgtgtagtcaatcacttccattttctcctcagctaacaacttggacgatgtttctaccgatatttgt |
330 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||| | |||||| ||||||| ||| |
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| T |
10283370 |
gtgtcctggttgtttagataaatcaatgtagctagtgtagtcaatcacttctattttctccttagctaacaactcggatgctgtttccaccgatagttgc |
10283469 |
T |
|
| Q |
331 |
agatca |
336 |
Q |
| |
|
|||||| |
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|
| T |
10283470 |
agatca |
10283475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 13978996 - 13979045
Alignment:
| Q |
49 |
taatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttc |
98 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| ||||| ||||||||| |
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|
| T |
13978996 |
taatgatcaagaatcttttggaatgttcctttcccaacaactcggagttc |
13979045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 13979098 - 13979230
Alignment:
| Q |
151 |
aaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacataatgtcctggttctttggata |
250 |
Q |
| |
|
||||||||||||||||| | ||||||| || | || ||| ||||||||||||||||| |||||||| || || ||||| | ||| || || || |||| |
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|
| T |
13979098 |
aaagacttatccaaacaattgcaacatttactcaacaattcttcacttgcttcaccactaatttcccagaatattacatagtttccaggctcattagata |
13979197 |
T |
|
| Q |
251 |
aatcaatgtagcttgtgtagtcaatcacttcca |
283 |
Q |
| |
|
|||||| | ||||||| | ||||| ||||||| |
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|
| T |
13979198 |
aatcaacatggcttgtgaattcaataacttcca |
13979230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 290
Target Start/End: Complemental strand, 48369900 - 48369647
Alignment:
| Q |
37 |
cctaatccaacataatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggctccaatgcctttgactttcctggaactaacat |
136 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || ||||||||||||| ||||| ||| ||||| | ||||||||| | |||||||| | |||||| | |
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|
| T |
48369900 |
cctaatccaaggtaatgatcaagaatcttttgaaatgttcctttcctaacaactcgaagttctaaggctccaatagcgttgactttacgagaactagtgt |
48369801 |
T |
|
| Q |
137 |
agccagcatcaacaaaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacataatgtcc |
236 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| | ||||||||| ||||||||| ||||||||||| || |||||||||| || || ||||| | || |
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|
| T |
48369800 |
agcctgcatcgacaaaagacttgtccaaacagttgcaacattcatgaagcacttcttcacttgcttccccgttgatttcccagaagattacatagttccc |
48369701 |
T |
|
| Q |
237 |
tggttctttggataaatcaatgtagcttgtgtagtcaatcacttccattttctc |
290 |
Q |
| |
|
||| |||||||||||||||| | ||||||| | |||| ||||||| |||||| |
|
|
| T |
48369700 |
tggctctttggataaatcaacatggcttgtgaactcaacaacttccaatttctc |
48369647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 18044748 - 18044797
Alignment:
| Q |
49 |
taatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttc |
98 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||| ||||| ||||||||| |
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|
| T |
18044748 |
taatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc |
18044797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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