View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13071_low_9 (Length: 313)
Name: NF13071_low_9
Description: NF13071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13071_low_9 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 32684390 - 32684702
Alignment:
| Q |
1 |
attgcgttatattgtgatagtcaaagtgtcatttacataacatctattgtattcaatgaaagaactaagcatttagaaattgacatatagcttgctgaac |
100 |
Q |
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| T |
32684390 |
attgcgttatattttgatagtcaaagtgtcatttacataacatctatattattcaatgaaagaactaagcatttagaaattgacatatagcttgctgaac |
32684489 |
T |
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| Q |
101 |
aagttacatcataaaacagttggcaaagaaacttacatctcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaaaactag |
200 |
Q |
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| T |
32684490 |
aagttacatcataaaacagttggcaaagaaacttacatctcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaaaactag |
32684589 |
T |
|
| Q |
201 |
ctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagtgtatcattttctagttaacatgatcattttctttcttgttcattctcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684590 |
ctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagtgtatcattttctagttaacatgatcattttctttcttgttcattctcta |
32684689 |
T |
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| Q |
301 |
ttctgatattctt |
313 |
Q |
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||||||| ||||| |
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| T |
32684690 |
ttctgattttctt |
32684702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 263
Target Start/End: Complemental strand, 32560032 - 32559771
Alignment:
| Q |
2 |
ttgcgttatattgtgatagtcaaagtgtcatttacataacatctattgtattcaatgaaagaactaagcatttagaaattgacatatagcttgctgaaca |
101 |
Q |
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| T |
32560032 |
ttgcgttatattgtgatagtgaaagtgtcatttacataacatgcattgtattcaatgaaagaactaagcatttagaaattgacatatagcttgctgaata |
32559933 |
T |
|
| Q |
102 |
agttacatcataaaacagttggcaaagaaacttacatctcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaaaactagc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559932 |
agttacatcataaaacagttggcaaagaaacttacatctcagtatacttagttagagagcttgtaactaacattccctctcaagattgatgaaaactagc |
32559833 |
T |
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| Q |
202 |
tagatcgtgattgcatagacgaaaactacaactatataagatgcatcagtgtatcattttct |
263 |
Q |
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| T |
32559832 |
tagatcgtgattgcatagacgaaaactacaactatataagatgcatcagtgtatcattttct |
32559771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 32559780 - 32559741
Alignment:
| Q |
274 |
atcattttctttcttgttcattctctattctgatattctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
32559780 |
atcattttctttcttgttcattctctattctgattttctt |
32559741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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