View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13072_high_2 (Length: 535)
Name: NF13072_high_2
Description: NF13072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13072_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 19330778 - 19331297
Alignment:
| Q |
1 |
aaacgagaacgcagagacaccaattgtagatctaggatgagaaagacggtagattggaattgtcttcaactttacgaggaggaaaatcatggtgacgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19330778 |
aaacgagaacgcagagacaccaattgtagatctaggatgagaaagacggtagattggaattgtcttcaactttacgaggaggaaaatcatggtgacgaag |
19330877 |
T |
|
| Q |
101 |
aaagcgaggaagaatgagcttggtagtattggggacgatgagcatcatagtggaatgcaaatgctggttgggaaaggaggaggaggaatatagaaaggga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19330878 |
aaagcgaggaagaatgagcttggtagtattggggacgatgagcaacatagcgaaatgcaaatgctggttgggaaaggaggaggaggaatatagaaaggga |
19330977 |
T |
|
| Q |
201 |
aaggaagaacatcacggacataaactagtcttgtaataatgaaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttactaaaacta |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
19330978 |
aaggaagaacatcagggacataaactagtcttgtaataatgaaggaaagagaaaaagagatgatcgaaagttatagataaaggttattttagtaaaacta |
19331077 |
T |
|
| Q |
301 |
aaattatttagcagtgcttaacggctgtttaactgaaatatnnnnnnntggaacaaaatgtatcaaaaatcagctgttgggggaggataatgtgtgtttc |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19331078 |
aaattatttagcagtgcttaacggctgtttaactgaaatataaaaaaatggatcaaaatgtatcaaaaatcatctgttgggggaggataatgtgtgtttc |
19331177 |
T |
|
| Q |
401 |
aaaataggaggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaatttactctacttattaatccataatgtttaactgtcctcctcgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19331178 |
aaaataggaggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaatttactctacttattaatccataatgtttaactgtcctcctcgt |
19331277 |
T |
|
| Q |
501 |
gaacttaggtcagttggttg |
520 |
Q |
| |
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|||||||||||||||||||| |
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| T |
19331278 |
gaacttaggtcagttggttg |
19331297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 54269978 - 54269518
Alignment:
| Q |
1 |
aaacgagaacgcagagacaccaattgtagatctaggatgagaaagacggtagattggaattgtcttcaactttacgaggaggaaaatcatggtgacgaag |
100 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54269978 |
aaacgagaacgcagagacatcgattgtaaatctaggatgagaaagacagtagaatgggattgtcttcaactttacgaggaggaaaatcatggtgacgaag |
54269879 |
T |
|
| Q |
101 |
aaagcgaggaagaatgagcttggtagtattggggacgatgagcatcatagtggaatgcaaatgctggttgggaaaggaggaggaggaatatagaaaggga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54269878 |
aaagcgaggaagaatgagcttgatagtattggggacggtgagcagcatagcggaatgcaaatgctggttgggaaaggaggaggaggaatatagaaaggga |
54269779 |
T |
|
| Q |
201 |
aaggaagaacatcacggacataaactagtcttgtaataatgaaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttactaaaacta |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||| |
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|
| T |
54269778 |
aaggaagaacatcagggacataaactagtcttgtaataataaaggaaagagaaaaagagatgatcgaaagttatatataaaggttattttagtaatacta |
54269679 |
T |
|
| Q |
301 |
aaattatttagcagtgcttaacggctgtttaactgaaatatnnnnnnntggaacaaaatgtatcaaaaatcagctgttgggggaggataatgtgtgtttc |
400 |
Q |
| |
|
|||||||||| || || |||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
54269678 |
aaattatttaacaatggttaacggctgtttaacggaaatataaaaaaatggatcaaaatgtatcaaaaatcatatgttgggggaggataatgtgtgtttc |
54269579 |
T |
|
| Q |
401 |
aaaataggaggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaatttactc |
463 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
54269578 |
aaaataggagaggaggggagtgtaaaagtagcatctctcaggg--atgggatgtaatttactc |
54269518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 39 - 462
Target Start/End: Original strand, 2558997 - 2559408
Alignment:
| Q |
39 |
gagaaagacggtagattggaattgtcttcaactttacgaggaggaaaatcatggtgacgaagaaagcgaggaagaatgagcttggtagtattggggacga |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2558997 |
gagaaagacggtagattggaattgtcttcaactttacgaggaggaaaatcatggtgacgaagaaagcgaggaagaatgagcttggtagtattggggacga |
2559096 |
T |
|
| Q |
139 |
tgagcatcatagtggaatgcaaatgctggttgggaaaggaggaggaggaatatagaaagggaaaggaagaacatcacggacataaactagtcttgtaata |
238 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||||||| |
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|
| T |
2559097 |
tgagcaacatagcgaaatgcaaatgctggttgggaaaggaggaggaggaatatagaaagggaaaggaagaaaatcagggacat-aagaagtcttgtaata |
2559195 |
T |
|
| Q |
239 |
atgaaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttactaaaactaaaattatttagcagtgcttaacggctgtttaactgaaa |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||| |
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| T |
2559196 |
atgaaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttagtaatactaaaattatttaacagtgcttaacggctgtttaacgaaaa |
2559295 |
T |
|
| Q |
339 |
tatnnnnnnntggaacaaaatgtatcaaaaatcagctgttgggggaggataatgtgtgtttcaaaataggaggggaggggagtgtaaaagtagcatctct |
438 |
Q |
| |
|
||| || |||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
2559296 |
tat----------aaaaaaatgtatcaaaaatcatctgttgagagaggataatgtgtgttttaaaataggaggggaggggagtgtaaaagtagcatctct |
2559385 |
T |
|
| Q |
439 |
caggggagggggatgtaatttact |
462 |
Q |
| |
|
|||||||||||||| |||||||| |
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|
| T |
2559386 |
gaggggagggggatg-aatttact |
2559408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 382 - 460
Target Start/End: Original strand, 10056050 - 10056128
Alignment:
| Q |
382 |
ggaggataatgtgtgtttcaaaataggaggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaattta |
460 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
10056050 |
ggaggataatgtgtgtttcaaaatagaagggaaggggaatgtaaaagtagcatctctctagagagggggatgtaattta |
10056128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 10055921 - 10056001
Alignment:
| Q |
242 |
aaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttactaaaactaaaattatttagcagtgcttaac |
322 |
Q |
| |
|
|||||||||||||||| ||||| || |||| | |||||||| ||||||| ||| |||||| ||||||| | ||||||||| |
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|
| T |
10055921 |
aaggaaagagaaaaagcaatgacagagagttgttgataaaggctattttagtaatactaaatttatttaacggtgcttaac |
10056001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 464
Target Start/End: Original strand, 11205774 - 11205894
Alignment:
| Q |
349 |
tggaacaaaatgtatcaaaaatcagctgttgggggaggataatgtgtgtttcaaaata----ggaggggaggggagtgtaaaagtagcatctctca-ggg |
443 |
Q |
| |
|
|||| ||||||||||||||||||| || | |||||||||||||||||||||||||| | | ||||||||| |||||||| ||||||| ||| ||| |
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|
| T |
11205774 |
tggatcaaaatgtatcaaaaatcatctttcaagggaggataatgtgtgtttcaaaatatatagaatgggaggggaatgtaaaagcagcatctttcaaggg |
11205873 |
T |
|
| Q |
444 |
gagggggatgtaatttactct |
464 |
Q |
| |
|
| ||| ||||||||||||||| |
|
|
| T |
11205874 |
gtgggagatgtaatttactct |
11205894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 1263083 - 1263145
Alignment:
| Q |
408 |
gaggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaatttactctacttat |
470 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| |||| |
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|
| T |
1263083 |
gaggggaggggagtgtaattcaagcatctttgaggggaggggaatgtaatttactctatttat |
1263145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 463
Target Start/End: Original strand, 39574938 - 39574991
Alignment:
| Q |
409 |
aggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaatttactc |
463 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| |||||| |||||||||||| |
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|
| T |
39574938 |
aggggaggggaatgtaaaaagagcatctctcagggaaggggg-tgtaatttactc |
39574991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 44284375 - 44284432
Alignment:
| Q |
408 |
gaggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaatttactcta |
465 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |
|
|
| T |
44284375 |
gaggggaggggagtgtaattcaagcatctcttaggggaggggagtgtaatttactcta |
44284432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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