View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13072_high_5 (Length: 311)

Name: NF13072_high_5
Description: NF13072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13072_high_5
NF13072_high_5
[»] chr6 (21 HSPs)
chr6 (6-249)||(22702948-22703191)
chr6 (19-249)||(22697772-22698002)
chr6 (6-249)||(21402011-21402254)
chr6 (79-249)||(29490812-29490982)
chr6 (102-249)||(2817401-2817548)
chr6 (102-249)||(34142781-34142928)
chr6 (102-249)||(34155397-34155544)
chr6 (102-249)||(6727777-6727924)
chr6 (102-249)||(34376464-34376611)
chr6 (102-249)||(24190654-24190802)
chr6 (102-249)||(31983475-31983622)
chr6 (19-91)||(31981832-31981904)
chr6 (253-299)||(22699738-22699784)
chr6 (19-91)||(34376198-34376270)
chr6 (19-91)||(24191126-24191198)
chr6 (19-91)||(24192223-24192295)
chr6 (6-62)||(29491005-29491061)
chr6 (19-79)||(34142358-34142418)
chr6 (19-79)||(34154974-34155034)
chr6 (38-91)||(6728193-6728246)
chr6 (19-91)||(2817901-2817973)
[»] chr5 (23 HSPs)
chr5 (6-249)||(17510328-17510571)
chr5 (6-249)||(42019843-42020086)
chr5 (6-223)||(17505223-17505440)
chr5 (6-249)||(42024623-42024866)
chr5 (6-223)||(43579930-43580147)
chr5 (11-223)||(41858861-41859071)
chr5 (113-223)||(41853846-41853956)
chr5 (102-222)||(1413100-1413220)
chr5 (102-223)||(36254517-36254638)
chr5 (102-249)||(24770605-24770752)
chr5 (102-218)||(26709688-26709804)
chr5 (102-218)||(26979422-26979538)
chr5 (102-192)||(24776116-24776206)
chr5 (19-91)||(1413806-1413878)
chr5 (253-299)||(17508630-17508676)
chr5 (253-299)||(41857149-41857195)
chr5 (253-299)||(42023542-42023588)
chr5 (253-299)||(24772849-24772895)
chr5 (19-91)||(24776563-24776635)
chr5 (19-91)||(26709372-26709444)
chr5 (19-91)||(26979106-26979178)
chr5 (19-91)||(36254105-36254177)
chr5 (19-91)||(24771108-24771180)
[»] chr4 (35 HSPs)
chr4 (6-249)||(8984987-8985230)
chr4 (6-249)||(13700780-13701023)
chr4 (6-249)||(21304535-21304778)
chr4 (6-249)||(8979867-8980110)
chr4 (6-249)||(21299415-21299658)
chr4 (6-249)||(54991746-54991989)
chr4 (6-249)||(54990392-54990635)
chr4 (19-223)||(39999405-39999609)
chr4 (19-223)||(40004363-40004567)
chr4 (19-223)||(54343539-54343743)
chr4 (19-223)||(54348693-54348897)
chr4 (19-223)||(36359664-36359868)
chr4 (19-223)||(36354478-36354682)
chr4 (102-223)||(53798329-53798450)
chr4 (102-249)||(41393858-41394005)
chr4 (102-223)||(51018732-51018853)
chr4 (102-249)||(9763273-9763420)
chr4 (102-249)||(13695757-13695904)
chr4 (102-249)||(13711370-13711517)
chr4 (102-249)||(4207042-4207188)
chr4 (102-222)||(47045647-47045767)
chr4 (19-91)||(13695431-13695503)
chr4 (253-299)||(13699067-13699113)
chr4 (253-299)||(21301325-21301371)
chr4 (253-299)||(36357870-36357916)
chr4 (253-299)||(40002798-40002844)
chr4 (253-299)||(54346932-54346978)
chr4 (19-91)||(9763771-9763843)
chr4 (19-91)||(41393512-41393584)
chr4 (19-91)||(53797898-53797970)
chr4 (253-299)||(8981777-8981823)
chr4 (253-299)||(13702945-13702991)
chr4 (19-101)||(51019117-51019199)
chr4 (19-91)||(13710938-13711010)
chr4 (19-91)||(47046060-47046132)
[»] chr1 (18 HSPs)
chr1 (6-249)||(27711593-27711836)
chr1 (6-223)||(37404026-37404243)
chr1 (6-223)||(37409145-37409362)
chr1 (20-223)||(34317840-34318043)
chr1 (6-223)||(27716713-27716930)
chr1 (19-223)||(36684270-36684474)
chr1 (6-223)||(11250731-11250948)
chr1 (102-249)||(5725365-5725512)
chr1 (102-249)||(3585301-3585448)
chr1 (102-248)||(5730771-5730917)
chr1 (102-223)||(48245998-48246119)
chr1 (164-223)||(50959010-50959069)
chr1 (253-299)||(27715000-27715046)
chr1 (19-91)||(5730374-5730446)
chr1 (253-299)||(37405908-37405954)
chr1 (19-91)||(3584870-3584942)
chr1 (253-299)||(5728674-5728721)
chr1 (19-101)||(48246427-48246509)
[»] scaffold0517 (2 HSPs)
scaffold0517 (6-223)||(3833-4050)
scaffold0517 (253-299)||(2120-2166)
[»] chr7 (31 HSPs)
chr7 (19-249)||(33238338-33238568)
chr7 (19-249)||(33243515-33243745)
chr7 (19-223)||(47994136-47994340)
chr7 (19-223)||(47999311-47999515)
chr7 (102-249)||(21080321-21080468)
chr7 (102-223)||(2233978-2234099)
chr7 (102-249)||(32211965-32212112)
chr7 (102-249)||(42572600-42572747)
chr7 (102-223)||(17496100-17496221)
chr7 (102-223)||(17556993-17557114)
chr7 (102-249)||(12935084-12935231)
chr7 (102-249)||(19308876-19309023)
chr7 (102-249)||(47176496-47176643)
chr7 (109-223)||(16538699-16538813)
chr7 (109-223)||(16626849-16626963)
chr7 (102-249)||(43893542-43893689)
chr7 (170-249)||(47544749-47544828)
chr7 (19-91)||(2234384-2234456)
chr7 (253-299)||(33241732-33241778)
chr7 (253-299)||(47997529-47997575)
chr7 (19-91)||(12934666-12934738)
chr7 (19-91)||(19309365-19309437)
chr7 (19-91)||(21080793-21080865)
chr7 (19-91)||(42572214-42572286)
chr7 (19-91)||(43893138-43893210)
chr7 (19-91)||(16539166-16539238)
chr7 (19-91)||(16626424-16626496)
chr7 (19-91)||(17495672-17495744)
chr7 (19-91)||(17557470-17557542)
chr7 (19-91)||(47176904-47176976)
chr7 (19-79)||(32212419-32212479)
[»] chr3 (28 HSPs)
chr3 (6-223)||(55129060-55129276)
chr3 (6-216)||(17368989-17369199)
chr3 (19-249)||(20090191-20090421)
chr3 (19-249)||(20095316-20095546)
chr3 (19-223)||(15762585-15762789)
chr3 (19-223)||(15767746-15767950)
chr3 (102-249)||(3481649-3481796)
chr3 (102-223)||(34128437-34128558)
chr3 (102-223)||(17358566-17358686)
chr3 (102-223)||(30338126-30338247)
chr3 (102-249)||(30341204-30341351)
chr3 (102-223)||(54271312-54271433)
chr3 (102-192)||(3476249-3476339)
chr3 (102-192)||(4117007-4117097)
chr3 (19-91)||(3482166-3482238)
chr3 (253-299)||(3478439-3478485)
chr3 (253-299)||(15764511-15764557)
chr3 (253-299)||(17362634-17362680)
chr3 (253-299)||(17367276-17367322)
chr3 (253-299)||(20092142-20092188)
chr3 (19-91)||(17358107-17358179)
chr3 (19-91)||(54270914-54270986)
chr3 (19-91)||(4117345-4117417)
chr3 (19-91)||(30338506-30338578)
chr3 (19-91)||(34128923-34128995)
chr3 (19-91)||(3476699-3476771)
chr3 (19-91)||(10321712-10321784)
chr3 (21-66)||(10321816-10321861)
[»] scaffold0014 (3 HSPs)
scaffold0014 (19-223)||(31881-32085)
scaffold0014 (19-223)||(26709-26913)
scaffold0014 (253-299)||(30102-30148)
[»] chr2 (14 HSPs)
chr2 (6-249)||(40392589-40392832)
chr2 (19-223)||(42728175-42728379)
chr2 (19-222)||(42723007-42723210)
chr2 (19-223)||(44096638-44096842)
chr2 (32-223)||(44754161-44754352)
chr2 (32-223)||(44759327-44759518)
chr2 (6-223)||(40518075-40518297)
chr2 (32-220)||(40519929-40520122)
chr2 (102-249)||(4162895-4163042)
chr2 (102-249)||(28751021-28751168)
chr2 (253-299)||(42724940-42724986)
chr2 (253-299)||(44756092-44756138)
chr2 (19-91)||(4163331-4163403)
chr2 (19-91)||(28751483-28751555)
[»] scaffold0055 (1 HSPs)
scaffold0055 (19-223)||(3360-3564)
[»] scaffold0052 (1 HSPs)
scaffold0052 (19-223)||(80971-81175)
[»] chr8 (22 HSPs)
chr8 (19-223)||(32010862-32011066)
chr8 (19-223)||(32016036-32016240)
chr8 (6-249)||(2165394-2165638)
chr8 (102-249)||(43998546-43998693)
chr8 (102-249)||(17955134-17955281)
chr8 (102-223)||(24885324-24885445)
chr8 (102-249)||(42513848-42513995)
chr8 (102-192)||(21641184-21641273)
chr8 (253-299)||(21645574-21645620)
chr8 (19-101)||(24884982-24885064)
chr8 (253-299)||(32014255-32014301)
chr8 (19-91)||(21643835-21643907)
chr8 (19-91)||(21643020-21643092)
chr8 (19-91)||(21643395-21643467)
chr8 (20-83)||(42514182-42514245)
chr8 (19-91)||(21641520-21641592)
chr8 (19-91)||(21641895-21641967)
chr8 (19-91)||(21642270-21642342)
chr8 (19-91)||(21642645-21642717)
chr8 (255-295)||(19434003-19434043)
chr8 (255-295)||(19570152-19570192)
chr8 (19-91)||(43998984-43999056)
[»] scaffold0594 (2 HSPs)
scaffold0594 (102-249)||(8534-8681)
scaffold0594 (19-91)||(8962-9034)
[»] scaffold0166 (5 HSPs)
scaffold0166 (102-249)||(12986-13133)
scaffold0166 (102-192)||(18500-18590)
scaffold0166 (253-299)||(15233-15279)
scaffold0166 (19-91)||(13493-13565)
scaffold0166 (19-91)||(18946-19018)
[»] scaffold0060 (2 HSPs)
scaffold0060 (102-160)||(37654-37712)
scaffold0060 (19-101)||(37279-37361)
[»] scaffold0165 (1 HSPs)
scaffold0165 (253-299)||(15542-15588)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 22703191 - 22702948
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22703191 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 22703092  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703091 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 22702992  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  22702991 tcactagtatactccaagtttttttcattatacactagtgttcc 22702948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 22698002 - 22697772
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22698002 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 22697903  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697902 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 22697803  T
Q  219 ccaagnnnnnnncattatacactagtgttcc 249  Q
    |||||       |||||||||||||||||||    
T  22697802 ccaagtttttttcattatacactagtgttcc 22697772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 21402011 - 21402254
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||| | |||||||||||||||| |||||| |||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  21402011 ggagaagagaggagagaaaaccaaagaagagtattcgattcttagtttttgagtgatgaatactattcccaagctctcaatttataaggaggatttctac 21402110  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21402111 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 21402210  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    |||||| |||||||||||       |||||||||||||||||||    
T  21402211 tcactactatactccaagtttttttcattatacactagtgttcc 21402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 79 - 249
Target Start/End: Complemental strand, 29490982 - 29490812
Alignment:
Q  79 ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttg 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490982 ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttg 29490883  T
Q  179 tgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||    
T  29490882 tgtttacattccaaaagctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 29490812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 2817548 - 2817401
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817548 ctactagagtgtgtgatctacccaatgtgggacattaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 2817449  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  2817448 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 2817401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 34142781 - 34142928
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34142781 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34142880  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34142881 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34142928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 34155397 - 34155544
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34155397 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34155496  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34155497 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34155544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 6727924 - 6727777
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  6727924 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 6727825  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  6727824 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 6727777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 34376464 - 34376611
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  34376464 ctactagagtgtgttatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 34376563  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34376564 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34376611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 24190802 - 24190654
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaa-ttttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 200  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||     
T  24190802 ctactagagtgtgtgatctacccaatgtgggacataaaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcct 24190703  T
Q  201 caaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    || |   ||||||||||||||||       || ||||||||||||||||    
T  24190702 cataacaactagtatactccaagtttttgccaatatacactagtgttcc 24190654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 31983475 - 31983622
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | |||| |    
T  31983475 ctactagagtgtgtgatctacccaatgcgggacataaaattttcaattcacactttacactaatttctacatcattgtgtttacattccaatgtctcctc 31983574  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  31983575 ataaaaactagtatactccaagtttttgccaatatacactagtgttcc 31983622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 31981832 - 31981904
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| |  ||||||||||| |||||||    
T  31981832 gagaaaaccagagaagagtattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 31981904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 22699784 - 22699738
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22699784 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 22699738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 34376198 - 34376270
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  34376198 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 34376270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 24191198 - 24191126
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||| | || ||||||||||| |||||||    
T  24191198 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 24192295 - 24192223
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||| | || ||||||||||| |||||||    
T  24192295 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24192223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 29491061 - 29491005
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaa 62  Q
    |||| |||||||||| |||| |||| ||||||||| |||||||||||||||||||||    
T  29491061 ggagaagagaggagataaaatcagagaagagtatttgattctcagttttggagtgaa 29491005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 34142358 - 34142418
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagc 79  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || |||||||    
T  34142358 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34142418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 34154974 - 34155034
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagc 79  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || |||||||    
T  34154974 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34155034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 6728246 - 6728193
Alignment:
Q  38 attcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  6728246 attcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 6728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 2817973 - 2817901
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||  |||||||||| ||||||   || ||||||||||| |||||||    
T  2817973 gagaaaaccagagaagaggattcgattcttggttttggagtaaagaatctcattcccgagctctctatttata 2817901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 17510328 - 17510571
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17510328 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 17510427  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510428 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 17510527  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  17510528 tcactagtatactccaagtttttttcattatacactagtgttcc 17510571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 42019843 - 42020086
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42019843 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 42019942  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42019943 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacattttacattagtttctccatccttgtgtttacattccaaaggctccacaaac 42020042  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  42020043 tcactagtatactccaagtttttttcattatacactagtgttcc 42020086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 17505223 - 17505440
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17505223 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 17505322  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  17505323 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacaatagtttttccatccttgtgtttacattccaaaggctccacaaac 17505422  T
Q  206 tcactagtatactccaag 223  Q
    ||||||||||| ||||||    
T  17505423 tcactagtatattccaag 17505440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 42024623 - 42024866
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42024623 ggagaagagaggagagaaaaccagagaagagtattcgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 42024722  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42024723 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacattttacactagtttctccatccttatgtttacattccaaaggctccacaaac 42024822  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||| ||||       |||||||||||||||||||    
T  42024823 tcactagtatacttcaagtttttttcattatacactagtgttcc 42024866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 43579930 - 43580147
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  43579930 ggagaagagaggagagaaaatcagagaagagtattcgattctcagttttggtgtgaaaaatactattcccgagctctcaatttataaggaggatttctac 43580029  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580030 tagagtatgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 43580129  T
Q  206 tcactagtatactccaag 223  Q
    ||||||||||||||||||    
T  43580130 tcactagtatactccaag 43580147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 41858861 - 41859071
Alignment:
Q  11 agagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagag 110  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  41858861 agagagaagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggagaatttctactagag 41858960  T
Q  111 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 210  Q
    |||  |||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  41858961 tgt--gatctacccgatgtgggacatagaattttcaattcacactttacactaatttttccatccttgtgtttacattccaaaggctccacaaactcact 41859058  T
Q  211 agtatactccaag 223  Q
    |||||||||||||    
T  41859059 agtatactccaag 41859071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 41853846 - 41853956
Alignment:
Q  113 tgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41853846 tgtgatctacccgatgtgggacatagaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactccctag 41853945  T
Q  213 tatactccaag 223  Q
    |||||||||||    
T  41853946 tatactccaag 41853956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 1413220 - 1413100
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1413220 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 1413121  T
Q  202 aaactcactagtatactccaa 222  Q
    | |   |||||||||||||||    
T  1413120 ataacaactagtatactccaa 1413100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 36254517 - 36254638
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||    
T  36254517 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaatgtctccac 36254616  T
Q  202 aaactcactagtatactccaag 223  Q
    | |   ||||||||||||||||    
T  36254617 ataacaactagtatactccaag 36254638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 24770752 - 24770605
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  24770752 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 24770653  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  24770652 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 24770605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 26709688 - 26709804
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26709688 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26709787  T
Q  202 aaactcactagtatact 218  Q
    ||||  |||||||||||    
T  26709788 aaaccaactagtatact 26709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 26979422 - 26979538
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26979422 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26979521  T
Q  202 aaactcactagtatact 218  Q
    ||||  |||||||||||    
T  26979522 aaaccaactagtatact 26979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 24776206 - 24776116
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 192  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  24776206 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 24776116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 1413878 - 1413806
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  1413878 gagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 1413806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 17508630 - 17508676
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17508630 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 41857149 - 41857195
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41857149 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 41857195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 42023542 - 42023588
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42023542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42023588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 24772895 - 24772849
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  24772895 catcagtggcgtaccttttcccaacaaaaataccattcttagtgatg 24772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 24776635 - 24776563
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||||| |  || |||||||| |||||||    
T  24776635 gagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 24776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 26709372 - 26709444
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| |||| |||||||||||||||||||||||| | |  ||||||||||| |||||||    
T  26709372 gagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26709444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 26979106 - 26979178
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| |||| |||||||||||||||||||||||| | |  ||||||||||| |||||||    
T  26979106 gagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26979178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 36254105 - 36254177
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||| ||| ||||| ||||||||||| ||||||||||||||||| | || ||| ||||||| |||||||    
T  36254105 gagaaaactagagaagaggattcgattctcggttttggagtgaagaatcccattcccaagctctctatttata 36254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 24771180 - 24771108
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| |||||| || ||||||  |||||||||| |||||||| |  || |||||||| |||||||    
T  24771180 gagaaaaccagagaagagtgtttgattcttggttttggagtaaagaataccaatcctgagctctctatttata 24771108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 8985230 - 8984987
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8985230 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 8985131  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985130 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 8985031  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  8985030 tcactagtatactccaagtttttttcattatacactagtgttcc 8984987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 13700780 - 13701023
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13700780 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 13700879  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700880 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 13700979  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  13700980 tcactagtatactccaagtttttttcattatacactagtgttcc 13701023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 21304778 - 21304535
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21304778 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 21304679  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304678 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 21304579  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  21304578 tcactagtatactccaagtttttttcattatacactagtgttcc 21304535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 8980110 - 8979867
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  8980110 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattctcgagctctcaatttataaggaggatttctac 8980011  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8980010 tagagtgtgtgatctacccgatatgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 8979911  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  8979910 tcactagtatactccaagtttttttcattatacactagtgttcc 8979867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 21299658 - 21299415
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  21299658 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 21299559  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21299558 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccacaaac 21299459  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  21299458 tcactagtatactccaagtttttttcattatacactagtgttcc 21299415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 54991746 - 54991989
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  54991746 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttgaagtgaagaatactattcccgagctttcaatttataaggaggatttctac 54991845  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54991846 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 54991945  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  54991946 tcactagtatactccaagtttttttcattatacactagtgttcc 54991989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 54990635 - 54990392
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54990635 ggagtagagaggagagaaaacaagagaagagtatttgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggagaatttctac 54990536  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54990535 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaac 54990436  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       ||||||||| |||||||||    
T  54990435 tcactagtatactccaagtttttttcattatacattagtgttcc 54990392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 39999405 - 39999609
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39999405 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 39999504  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  39999505 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 39999604  T
Q  219 ccaag 223  Q
    |||||    
T  39999605 ccaag 39999609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 40004363 - 40004567
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40004363 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 40004462  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  40004463 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 40004562  T
Q  219 ccaag 223  Q
    |||||    
T  40004563 ccaag 40004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 54343539 - 54343743
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54343539 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 54343638  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  54343639 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 54343738  T
Q  219 ccaag 223  Q
    |||||    
T  54343739 ccaag 54343743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 54348693 - 54348897
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54348693 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 54348792  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  54348793 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 54348892  T
Q  219 ccaag 223  Q
    |||||    
T  54348893 ccaag 54348897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 36359664 - 36359868
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||    
T  36359664 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcctgagctctcaatttataaggagaatttctactagagtgtgtgat 36359763  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  36359764 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacatttcaaaggctccacaaactcactagtatact 36359863  T
Q  219 ccaag 223  Q
    |||||    
T  36359864 ccaag 36359868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 36354478 - 36354682
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||| |||||||||||||||||||||||||    
T  36354478 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactatttctgagctctcaatttataaagaggatttctactagagtgtgtgat 36354577  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  36354578 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaattcactagtatact 36354677  T
Q  219 ccaag 223  Q
    |||||    
T  36354678 ccaag 36354682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 53798329 - 53798450
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53798329 ctactagagtgtgtgatctacccaatgtaggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccaaaggctccac 53798428  T
Q  202 aaactcactagtatactccaag 223  Q
    ||||  ||||||||||||||||    
T  53798429 aaaccaactagtatactccaag 53798450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 41393858 - 41394005
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  41393858 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttttccatccttgtgtttacattccaaaggcttcac 41393957  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  41393958 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 41394005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 51018853 - 51018732
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  51018853 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtgtacattccaaagtctccac 51018754  T
Q  202 aaactcactagtatactccaag 223  Q
    | |   ||||||||| ||||||    
T  51018753 ataacaactagtatattccaag 51018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 9763420 - 9763273
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9763420 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcatgctttacactagtttctacatccttgtgtttacattccaaagtctccac 9763321  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  9763320 ataacaactagtatactccaagtttatgccaatatacactagtgttcc 9763273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 13695757 - 13695904
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13695757 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13695856  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13695857 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13695904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 13711370 - 13711517
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13711370 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13711469  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13711470 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13711517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 4207042 - 4207188
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| |    
T  4207042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtg-ttacattccaatgtctcctc 4207140  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  4207141 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 4207188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 47045767 - 47045647
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||| || | |||| |    
T  47045767 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctatttcattgtgtttacattctaatgtctcctc 47045668  T
Q  202 aaactcactagtatactccaa 222  Q
    | |   |||||||||||||||    
T  47045667 ataacaactagtatactccaa 47045647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 13695431 - 13695503
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  13695431 gagaaaaccagagaagagtattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 13695503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 13699067 - 13699113
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13699067 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 13699113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 21301371 - 21301325
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21301371 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21301325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 36357870 - 36357916
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36357870 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 36357916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 40002798 - 40002844
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40002798 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 40002844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 54346932 - 54346978
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54346932 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 54346978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 9763843 - 9763771
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||||| |  ||||||||||| |||||||    
T  9763843 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 9763771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 41393512 - 41393584
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  41393512 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 41393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 53797898 - 53797970
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| |||  ||||||||||| |||||||    
T  53797898 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgctaatcccgagctctctatttata 53797970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 8981823 - 8981777
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  8981823 catcaatggcgtaccctttcccaacaaaaataccattcttagtgatg 8981777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 13702945 - 13702991
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  13702945 catcagtggcgtaccctttcccaacaaaagtaccattcttagtgatg 13702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 51019199 - 51019117
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggattt 101  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || |||||| |||| |||||||  ||||||||    
T  51019199 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggattt 51019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 13710938 - 13711010
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||| | || ||||||||||| |||||||    
T  13710938 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13711010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 47046132 - 47046060
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||  ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  47046132 gagaaaaccagagaagatgattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 47046060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 27711593 - 27711836
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27711593 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 27711692  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711693 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 27711792  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  27711793 tcactagtatactccaagtttttttcattatacactagtgttcc 27711836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 37404243 - 37404026
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  37404243 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgggctctcaatttataaggaggatttctac 37404144  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404143 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 37404044  T
Q  206 tcactagtatactccaag 223  Q
    ||||||||||||||||||    
T  37404043 tcactagtatactccaag 37404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 37409362 - 37409145
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  37409362 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttatac 37409263  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409262 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 37409163  T
Q  206 tcactagtatactccaag 223  Q
    ||||||||||||||||||    
T  37409162 tcactagtatactccaag 37409145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 34318043 - 34317840
Alignment:
Q  20 agaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgatc 119  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34318043 agaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 34317944  T
Q  120 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317943 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 34317844  T
Q  220 caag 223  Q
    ||||    
T  34317843 caag 34317840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 27716713 - 27716930
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27716713 ggagaagagaggagagaaaaccagataagagtattcgattatcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 27716812  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  27716813 tagagtgtgtgatctacccgatgtgggacataaaaatttcaattcacactttacactagtttctccatccttgtgcttacgttccaaaggctccacaaac 27716912  T
Q  206 tcactagtatactccaag 223  Q
    ||||||||||||||||||    
T  27716913 tcactagtatactccaag 27716930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 36684474 - 36684270
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36684474 gagaaaaccagagaagagtattcgattctcagttttggagtcaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 36684375  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684374 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 36684275  T
Q  219 ccaag 223  Q
    |||||    
T  36684274 ccaag 36684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 11250948 - 11250731
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||    
T  11250948 ggagaagagaggagagaaaaccagagaagagtattcgattctcaattttggagtaaagaatactattcacgagctctcaatttataaggaggatttctac 11250849  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11250848 tagagtgtgtgatctaaccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagactccacaaac 11250749  T
Q  206 tcactagtatactccaag 223  Q
    ||||| ||||||||||||    
T  11250748 tcactggtatactccaag 11250731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 5725365 - 5725512
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725365 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 5725464  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  5725465 aaaccaactagtatactccaagttttttccattatacactagtgttcc 5725512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 3585301 - 3585448
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3585301 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacattttacactagtttctccatccttgtgtttacattccaaaggctccac 3585400  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||  ||||||||||||||||       || ||||||||||||||||    
T  3585401 aaaccaactagtatactccaagttttttccaatatacactagtgttcc 3585448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 102 - 248
Target Start/End: Original strand, 5730771 - 5730917
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  5730771 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggtttcac 5730870  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttc 248  Q
    ||||  |||||||||||||||        ||||||||||||||||||    
T  5730871 aaaccaactagtatactccaaattttttccattatacactagtgttc 5730917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 48246119 - 48245998
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  48246119 ctactagagtgtgtgatctacccaatgtgggacataaaaattttaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 48246020  T
Q  202 aaactcactagtatactccaag 223  Q
    | |   ||||||||||||||||    
T  48246019 ataacaactagtatactccaag 48245998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 50959069 - 50959010
Alignment:
Q  164 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 223  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50959069 gtttctccattcttgtgtttacattccaaaggctccacaaactcactagtatactccaag 50959010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 27715000 - 27715046
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27715000 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 27715046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 5730374 - 5730446
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | |  ||||||||||| |||||||    
T  5730374 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 5730446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 37405954 - 37405908
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  37405954 catcagtggcgtaccctttcccaacaaaattatcattcttagtgatg 37405908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 3584870 - 3584942
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | |  || |||||||| |||||||    
T  3584870 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcctgagctctctatttata 3584942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 5728674 - 5728721
Alignment:
Q  253 catcagtggcgtaccctttcccaac-aaaaataccattcttagtgatg 299  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5728674 catcagtggcgtaccctttcccaacaaaaaatatcattcttagtgatg 5728721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 48246509 - 48246427
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggattt 101  Q
    |||||||||||| ||||| ||||||||||| |||||| |||||||||| | ||  ||||| |||| |||||||  ||||||||    
T  48246509 gagaaaaccagagaagaggattcgattctcggttttgtagtgaagaatcccatttccgaggtctctatttatagagaggattt 48246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 3833 - 4050
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3833 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 3932  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3933 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 4032  T
Q  206 tcactagtatactccaag 223  Q
    ||||||||||||||||||    
T  4033 tcactagtatactccaag 4050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 2120 - 2166
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2120 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 2166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 33238338 - 33238568
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33238338 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33238437  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238438 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 33238537  T
Q  219 ccaagnnnnnnncattatacactagtgttcc 249  Q
    |||||       |||||||||||||||||||    
T  33238538 ccaagtttttttcattatacactagtgttcc 33238568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 33243515 - 33243745
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33243515 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33243614  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33243615 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatgccaaaggctccacaaactcactagtatact 33243714  T
Q  219 ccaagnnnnnnncattatacactagtgttcc 249  Q
    |||||       |||||||||||||||||||    
T  33243715 ccaagtttttttcattatacactagtgttcc 33243745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 47994136 - 47994340
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47994136 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 47994235  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994236 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 47994335  T
Q  219 ccaag 223  Q
    |||||    
T  47994336 ccaag 47994340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 47999311 - 47999515
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47999311 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 47999410  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  47999411 ctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttatgtttacattccaaaggctccacaaactcactaatatact 47999510  T
Q  219 ccaag 223  Q
    |||||    
T  47999511 ccaag 47999515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 21080468 - 21080321
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21080468 ctactagagtgtgtgatctacccaacgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 21080369  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  21080368 aaaccaactagtatactccaagttttttccattatacactagtgttcc 21080321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 2234099 - 2233978
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2234099 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 2234000  T
Q  202 aaactcactagtatactccaag 223  Q
    ||||  ||||||||||||||||    
T  2233999 aaaccaactagtatactccaag 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 32212112 - 32211965
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  32212112 ctactagagtgtgtgatctacccaatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagtctcaac 32212013  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  32212012 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 32211965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 42572600 - 42572747
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  42572600 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 42572699  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42572700 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42572747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 17496100 - 17496221
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17496100 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17496199  T
Q  202 aaactcactagtatactccaag 223  Q
    | |   ||||||||||||||||    
T  17496200 ataacaactagtatactccaag 17496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 17557114 - 17556993
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17557114 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17557015  T
Q  202 aaactcactagtatactccaag 223  Q
    | |   ||||||||||||||||    
T  17557014 ataacaactagtatactccaag 17556993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 12935084 - 12935231
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  12935084 ctactaaagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 12935183  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  12935184 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12935231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 19309023 - 19308876
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  19309023 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 19308924  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  19308923 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 19308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 47176643 - 47176496
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  47176643 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 47176544  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  47176543 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 47176496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 16538813 - 16538699
Alignment:
Q  109 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 208  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16538813 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16538714  T
Q  209 ctagtatactccaag 223  Q
    |||||||||||||||    
T  16538713 ctagtatactccaag 16538699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 16626849 - 16626963
Alignment:
Q  109 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 208  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16626849 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16626948  T
Q  209 ctagtatactccaag 223  Q
    |||||||||||||||    
T  16626949 ctagtatactccaag 16626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 43893542 - 43893689
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |||| |    
T  43893542 ctactagagtgtgtgatctacccaatgagggacataaaattttcaattcacactttacgctagtttctacatcattgtgtttacattccaatgtctcctc 43893641  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  43893642 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 43893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 47544828 - 47544749
Alignment:
Q  170 ccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||    
T  47544828 ccatccttgtgtttacattccaaaggctccacaaactctctagtatactccaagtttttttcattatacactagtgttcc 47544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 2234456 - 2234384
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||||||  ||||||||||| |||||||    
T  2234456 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatactaatcccgagctctctatttata 2234384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 33241732 - 33241778
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33241732 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 33241778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 47997529 - 47997575
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47997529 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 47997575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 12934666 - 12934738
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  12934666 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 12934738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 19309437 - 19309365
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||| ||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  19309437 gagaaaaccagagaagaggatttgattctcggttttggagtgaagaatcccattcccgagctctctatttata 19309365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21080865 - 21080793
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| |||||||||||||||||| |||||||||| | |  ||||||||||| |||||||    
T  21080865 gagaaaaccagagaagaggattcgattctcagttttgaagtgaagaatgcaaatcccgagctctctatttata 21080793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 42572214 - 42572286
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || |||||| |||| |||||||    
T  42572214 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagttctctatttata 42572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 43893138 - 43893210
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| |||||||||||  |||||||||||||||| | || ||||||||||| |||||||    
T  43893138 gagaaaaccagagaagaggattcgattctcgattttggagtgaagaatcccattcccgagctctctatttata 43893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 16539238 - 16539166
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| |||  |||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  16539238 gagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 16626424 - 16626496
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| |||  |||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  16626424 gagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16626496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 17495672 - 17495744
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| |||| |||||| |||||||||| |||||| | || ||||||||||| |||||||    
T  17495672 gagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17495744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 17557542 - 17557470
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| |||| |||||| |||||||||| |||||| | || ||||||||||| |||||||    
T  17557542 gagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17557470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 47176976 - 47176904
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| |||||||| || |||||||||||||||||   || ||||||||||| |||||||    
T  47176976 gagaaaaccagagaagaggattcgattatcggttttggagtgaagaatctcattcccgagctctctatttata 47176904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 32212479 - 32212419
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagc 79  Q
    ||||||| |||| ||||| ||||||||||| ||||||||||||||||| | || |||||||    
T  32212479 gagaaaatcagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagc 32212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 55129060 - 55129276
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  55129060 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 55129159  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55129160 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat-cttgtgtttacattccaaaggctccacaaac 55129258  T
Q  206 tcactagtatactccaag 223  Q
    ||||||||||||||||||    
T  55129259 tcactagtatactccaag 55129276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 17368989 - 17369199
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17368989 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 17369088  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17369089 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 17369188  T
Q  206 tcactagtata 216  Q
      |||||||||    
T  17369189 caactagtata 17369199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 20090421 - 20090191
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20090421 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 20090322  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  20090321 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatact 20090222  T
Q  219 ccaagnnnnnnncattatacactagtgttcc 249  Q
    |||||       |||||||||||||||||||    
T  20090221 ccaagtttttttcattatacactagtgttcc 20090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 20095546 - 20095316
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20095546 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 20095447  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  20095446 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatact 20095347  T
Q  219 ccaagnnnnnnncattatacactagtgttcc 249  Q
    |||||       |||||||||||||||||||    
T  20095346 ccaagtttttttcattatacactagtgttcc 20095316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 15762789 - 15762585
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15762789 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 15762690  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15762689 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 15762590  T
Q  219 ccaag 223  Q
    |||||    
T  15762589 ccaag 15762585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 15767950 - 15767746
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15767950 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 15767851  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15767850 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 15767751  T
Q  219 ccaag 223  Q
    |||||    
T  15767750 ccaag 15767746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 3481796 - 3481649
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3481796 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 3481697  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||||||       |||||||||||||||||||    
T  3481696 aaactcactagtatactccaagtttttttcattatacactagtgttcc 3481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 34128558 - 34128437
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34128558 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 34128459  T
Q  202 aaactcactagtatactccaag 223  Q
    |||   ||||||||||||||||    
T  34128458 aaatcaactagtatactccaag 34128437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 17358566 - 17358686
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17358566 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacacta-tttctccatccttgtgtttacattccaaaggctccac 17358664  T
Q  202 aaactcactagtatactccaag 223  Q
    ||||  ||||||||| ||||||    
T  17358665 aaaccaactagtataatccaag 17358686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 30338247 - 30338126
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30338247 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactaatttctccatccttgtgtttacattccaaaggctccac 30338148  T
Q  202 aaactcactagtatactccaag 223  Q
    | |   ||||||||||||||||    
T  30338147 ataacaactagtatactccaag 30338126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 30341351 - 30341204
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341351 ctactagagtgtgtgatctacctaatgtgggccataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 30341252  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  30341251 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 30341204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 54271312 - 54271433
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54271312 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttagactagtttctccatccttgtgtttacattccaaaggctccac 54271411  T
Q  202 aaactcactagtatactccaag 223  Q
    | |   ||||||||||| ||||    
T  54271412 ataacaactagtatacttcaag 54271433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 3476339 - 3476249
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 192  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  3476339 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaa 3476249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 4117097 - 4117007
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 192  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4117097 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatcattgtgtttacattccaa 4117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 3482238 - 3482166
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  3482238 gagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 3482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 3478485 - 3478439
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3478485 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 3478439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 15764557 - 15764511
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15764557 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15764511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 17362634 - 17362680
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17362634 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 17367276 - 17367322
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17367276 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17367322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 20092188 - 20092142
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20092188 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 20092142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 17358107 - 17358179
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| | |  ||||||||||| |||||||    
T  17358107 gagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 17358179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 54270914 - 54270986
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  54270914 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 54270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 4117417 - 4117345
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  4117417 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 4117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 30338578 - 30338506
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | |  ||||||||||| |||||||    
T  30338578 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaaatcccgagctctctatttata 30338506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 34128995 - 34128923
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| | |  ||||| ||||| |||||||    
T  34128995 gagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgacctctctatttata 34128923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 3476771 - 3476699
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||   |||||||||||||||| | || ||||||||||| |||||||    
T  3476771 gagaaaaccagagaagaggattcgattcttgtttttggagtgaagaatcccattcccgagctctctatttata 3476699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 10321712 - 10321784
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    ||||||||| || ||||| |||| |||||| ||||||||||||||||| | |  ||||||||||| |||||||    
T  10321712 gagaaaacctgagaagaggattcaattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 10321784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 10321816 - 10321861
Alignment:
Q  21 gaaaaccagataagagtattcgattctcagttttggagtgaagaat 66  Q
    |||||||||| ||||| ||||||||||| ||||||| |||||||||    
T  10321816 gaaaaccagagaagaggattcgattctcggttttggggtgaagaat 10321861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 31881 - 32085
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31881 gagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 31980  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31981 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 32080  T
Q  219 ccaag 223  Q
    |||||    
T  32081 ccaag 32085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 26709 - 26913
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26709 gagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 26808  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26809 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaaggctccacaaactcactagtatact 26908  T
Q  219 ccaag 223  Q
    |||||    
T  26909 ccaag 26913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 30102 - 30148
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30102 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 30148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 40392589 - 40392832
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| ||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40392589 ggagaagagaggagagaaaatcagagaaaagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 40392688  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  40392689 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacattgcaaaggctccacaaac 40392788  T
Q  206 tcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  40392789 tcactagtatactccaagtttttttcattatacactagtgttcc 40392832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 42728379 - 42728175
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42728379 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42728280  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42728279 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42728180  T
Q  219 ccaag 223  Q
    |||||    
T  42728179 ccaag 42728175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 42723210 - 42723007
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42723210 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42723111  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42723110 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42723011  T
Q  219 ccaa 222  Q
    ||||    
T  42723010 ccaa 42723007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 44096638 - 44096842
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44096638 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 44096737  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  44096738 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaatgctccacaaactcactagtatact 44096837  T
Q  219 ccaag 223  Q
    |||||    
T  44096838 ccaag 44096842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 44754352 - 44754161
Alignment:
Q  32 aagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 131  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44754352 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44754253  T
Q  132 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44754252 gacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 44759518 - 44759327
Alignment:
Q  32 aagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 131  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44759518 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44759419  T
Q  132 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44759418 gacataaaattttcaattcacactttacactaatttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 40518297 - 40518075
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttat----aaggaggattt 101  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    |||||||||||    
T  40518297 ggagaagagaggagagaaaacaagagaagagtattcgattctcagttttggagtgaagaatactattcacgagctctcaatttattaataaggaggattt 40518198  T
Q  102 ctactagagtgtgtgatctaccc-gatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40518197 ctactagagtgtgtgatctaccccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttatattccaaaggctcca 40518098  T
Q  201 caaactcactagtatactccaag 223  Q
    ||||||||||| |||||||||||    
T  40518097 caaactcactattatactccaag 40518075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 40519929 - 40520122
Alignment:
Q  32 aagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttat----aaggaggatttctactagagtgtgtgatctaccc-ga 126  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||    
T  40519929 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttattcataaggaggatttctactagagtgtgtgatctaccccga 40520028  T
Q  127 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40520029 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 40520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 4163042 - 4162895
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4163042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 4162943  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||  ||||||||||||||||       |||||||||| ||||||||    
T  4162942 aaaccaactagtatactccaagttttttccattatacaccagtgttcc 4162895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 28751168 - 28751021
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751168 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 28751069  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  28751068 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 28751021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 42724986 - 42724940
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42724986 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42724940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 44756138 - 44756092
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44756138 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 44756092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 4163403 - 4163331
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | |  ||||||||||| |||||||    
T  4163403 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 4163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 28751555 - 28751483
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| ||||||||||| |||||||||||||||||   || ||||||||||| |||||||    
T  28751555 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttata 28751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 3360 - 3564
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3360 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 3459  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3460 ctaccggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 3559  T
Q  219 ccaag 223  Q
    |||||    
T  3560 ccaag 3564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 81175 - 80971
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  81175 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 81076  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81075 ctaccggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 80976  T
Q  219 ccaag 223  Q
    |||||    
T  80975 ccaag 80971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 32010862 - 32011066
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  32010862 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtatgat 32010961  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32010962 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 32011061  T
Q  219 ccaag 223  Q
    |||||    
T  32011062 ccaag 32011066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 32016036 - 32016240
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctactagagtgtgtgat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32016036 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 32016135  T
Q  119 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 218  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32016136 ctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaattcactagtatact 32016235  T
Q  219 ccaag 223  Q
    |||||    
T  32016236 ccaag 32016240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 2165638 - 2165394
Alignment:
Q  6 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggatttctac 105  Q
    |||| ||||| |||||||||| ||| ||||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2165638 ggagaagagatgagagaaaactagagaagagcatttgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 2165539  T
Q  106 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatt-ccaaaggctccacaaa 204  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  2165538 tagagtgtgtgatctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattcccaaagactccacaaa 2165439  T
Q  205 ctcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||||||||||||||||        |||||||||||||||||||    
T  2165438 ctcactagtatactccaaaattttttcattatacactagtgttcc 2165394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 43998693 - 43998546
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43998693 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatttcaaaggctccac 43998594  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  43998593 aaaccaactagtatactccaagtttttttcattatacactagtgttcc 43998546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 17955281 - 17955134
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17955281 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacacttcacactagtttctccatccttgtgtttacattccaaaggctccac 17955182  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    |||   |||||||||||| |||       |||||||||||||||||||    
T  17955181 aaaacaactagtatactctaagtcttttccattatacactagtgttcc 17955134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 24885324 - 24885445
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  24885324 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 24885423  T
Q  202 aaactcactagtatactccaag 223  Q
    | |   ||||||||||||||||    
T  24885424 ataacaactagtatactccaag 24885445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 42513995 - 42513848
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||    
T  42513995 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactattttctacatccttgtgtttacattccaatgtctccac 42513896  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42513895 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42513848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 21641273 - 21641184
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 192  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  21641273 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactag-atctacatccttgtatttacattccaa 21641184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 21645620 - 21645574
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21645620 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21645574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 24884982 - 24885064
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggattt 101  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || ||||||||||| |||||||  ||||||||    
T  24884982 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaattccattcccgagctctctatttatagagaggattt 24885064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 32014255 - 32014301
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32014255 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 32014301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21643907 - 21643835
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | || |||||| |||| |||||||    
T  21643907 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21643092 - 21643020
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| ||||||||||| ||||||||||||||||| | || |||||| |||| |||||||    
T  21643092 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21643467 - 21643395
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| ||||||||||| ||||||||||||||||| | || |||||| |||| |||||||    
T  21643467 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 42514245 - 42514182
Alignment:
Q  20 agaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctc 83  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||   || |||||||||||    
T  42514245 agaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctc 42514182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21641592 - 21641520
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| |||||||||||  |||||||||||||||| | || |||||| |||| |||||||    
T  21641592 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21641967 - 21641895
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| |||||||||||  |||||||||||||||| | || |||||| |||| |||||||    
T  21641967 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21642342 - 21642270
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| |||||||||||  |||||||||||||||| | || |||||| |||| |||||||    
T  21642342 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21642717 - 21642645
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||| | ||||| |||||||||||  |||||||||||||||| | || |||||| |||| |||||||    
T  21642717 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 19434003 - 19434043
Alignment:
Q  255 tcagtggcgtaccctttcccaacaaaaataccattcttagt 295  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19434003 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19434043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 19570152 - 19570192
Alignment:
Q  255 tcagtggcgtaccctttcccaacaaaaataccattcttagt 295  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19570152 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19570192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 43999056 - 43998984
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    ||||||| |||| ||||| ||||||||||||||||| |||| ||||||   |  ||||||||||| |||||||    
T  43999056 gagaaaatcagagaagaggattcgattctcagttttagagtaaagaatgtaaatcccgagctctctatttata 43998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 8681 - 8534
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681 ctactagagtgtgtgatctacccaatgtgggacataaaattttaaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 8582  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  8581 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 8534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 9034 - 8962
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||| ||| ||||| |||||||||||  |||||||||||||||| | || ||||||||||| |||||||    
T  9034 gagaaaactagagaagaggattcgattctcgtttttggagtgaagaatcccattcccgagctctctatttata 8962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 13133 - 12986
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13133 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13034  T
Q  202 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 249  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13033 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 18590 - 18500
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 192  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  18590 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 18500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 15279 - 15233
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15279 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 13565 - 13493
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||| | || ||||||||||| |||||||    
T  13565 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 19018 - 18946
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttata 91  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||||| |  || |||||||| |||||||    
T  19018 gagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 18946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 37654 - 37712
Alignment:
Q  102 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttaca 160  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37654 ctactggagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttaca 37712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 37279 - 37361
Alignment:
Q  19 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggaggattt 101  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||   || ||||||||||| |||||||  ||||||||    
T  37279 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttatagagaggattt 37361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 15542 - 15588
Alignment:
Q  253 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University