View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13072_low_1 (Length: 693)

Name: NF13072_low_1
Description: NF13072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13072_low_1
NF13072_low_1
[»] chr8 (6 HSPs)
chr8 (36-323)||(39309339-39309626)
chr8 (368-437)||(39308669-39308738)
chr8 (368-437)||(39309667-39309736)
chr8 (274-320)||(39308782-39308828)
chr8 (381-433)||(43235436-43235488)
chr8 (438-490)||(45385819-45385871)
[»] chr3 (7 HSPs)
chr3 (536-654)||(7821381-7821496)
chr3 (368-437)||(20918279-20918348)
chr3 (368-433)||(20919061-20919126)
chr3 (368-437)||(20927241-20927310)
chr3 (368-433)||(20928023-20928088)
chr3 (368-433)||(34936720-34936785)
chr3 (368-437)||(55444579-55444648)
[»] chr1 (3 HSPs)
chr1 (368-437)||(18526902-18526971)
chr1 (370-433)||(18526600-18526663)
chr1 (438-490)||(42248330-42248382)
[»] chr5 (4 HSPs)
chr5 (368-437)||(3635496-3635565)
chr5 (369-433)||(3636395-3636459)
chr5 (368-433)||(33529741-33529806)
chr5 (368-427)||(3635613-3635672)
[»] chr7 (4 HSPs)
chr7 (368-433)||(48204075-48204140)
chr7 (369-429)||(48203915-48203976)
chr7 (438-490)||(48754035-48754087)
chr7 (446-490)||(7347245-7347289)
[»] chr2 (3 HSPs)
chr2 (453-518)||(5993554-5993619)
chr2 (368-433)||(16871541-16871606)
chr2 (368-433)||(10140644-10140709)
[»] chr6 (1 HSPs)
chr6 (368-433)||(18065724-18065789)
[»] chr4 (2 HSPs)
chr4 (368-433)||(9483662-9483727)
chr4 (438-490)||(53400224-53400276)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 39309339 - 39309626
Alignment:
Q  36 gaaatggaggaggacaacggagatttaagcggcgatgacggcagcgaaggaagtgaagagaatgggaggaactaaacagacgcacgtgacggagtcaact 135  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39309339 gaaatggaggaggacaactgagatttaagcggcgatgacgacagcgaatgaagtgaagagaacgggaggaactaaacagacgcacgtgacggagtcaact 39309438  T
Q  136 tcggtgggttttgtgtggttgtaaaaggttgggtttttgcaatcattattccaggttttggcccgtctagtatggtgattaagggttttatgggtggata 235  Q
    ||| ||||||||||||||||||||||||||||||||||||||||  | ||||   |||||||| ||||||||||||||||||||||||||||| ||||||    
T  39309439 tcgatgggttttgtgtggttgtaaaaggttgggtttttgcaatcggtgttcctaattttggcctgtctagtatggtgattaagggttttatggatggata 39309538  T
Q  236 atgacagacgagacggcggcaccggcgggagggatctagatgagaagaaggaggccgatgtgttgccttaggagaggagcatgctggt 323  Q
    |||||||| |||||||||||||||||| |||| ||  |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  39309539 atgacagaggagacggcggcaccggcgagaggaattcagatgagaagaaggaggccggtgtgttgcctcaggagaggagcatgctggt 39309626  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 39308738 - 39308669
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatggact 437  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  39308738 gccacatgtcagtcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagatggact 39308669  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 39309667 - 39309736
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatggact 437  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  39309667 gccacatgtcaatcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagatagact 39309736  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 39308828 - 39308782
Alignment:
Q  274 gatgagaagaaggaggccgatgtgttgccttaggagaggagcatgct 320  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||    
T  39308828 gatgagaagaaggaggccggtgtgttgtctcaggagaggagcatgct 39308782  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 43235488 - 43235436
Alignment:
Q  381 catctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    ||||||||| ||||||||||||| ||||||| ||  |||||||||||||||||    
T  43235488 catctatgaagtgaaaagggataaatggaggcttggtaaatggagcaaagatg 43235436  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 490
Target Start/End: Complemental strand, 45385871 - 45385819
Alignment:
Q  438 ttttagtcccataattataaagtatctcaatttaatcatataaatcttatgtc 490  Q
    |||| |||||||||||||||||| | ||||||| ||| |||||||||||||||    
T  45385871 ttttggtcccataattataaagtgtttcaatttgatcctataaatcttatgtc 45385819  T

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Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 536 - 654
Target Start/End: Original strand, 7821381 - 7821496
Alignment:
Q  536 gaagtaataattttaggggtttggttttataatgtgaatcaacattagaaaggagtgatttaatgtaatttgatttaatgtaatatgtatgttagtgtga 635  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |   ||| ||||||||||| ||||||    
T  7821381 gaagtaatgattttaggggtttggttttctaatgtgaatcaacattaggaaggagtgatttaatgtaatttg--tatgtgt-atatgtatgttggtgtga 7821477  T
Q  636 cgtgaaggctgagagaaga 654  Q
    | |||||||||||||||||    
T  7821478 cctgaaggctgagagaaga 7821496  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 20918348 - 20918279
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatggact 437  Q
    |||||||||||||||||||||||||||||||||| | ||||||  || ||||||| || |||||||||||    
T  20918348 gccacatgtcagtcatctatgaggtgaaaagggaaaaatggagccttcttaaatgaagtaaagatggact 20918279  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 20919061 - 20919126
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    |||||||||||||||||||||||||||||||| | | |||||| ||| |||||||||| |||||||    
T  20919061 gccacatgtcagtcatctatgaggtgaaaaggaaaaaatggagttttcttaaatggagtaaagatg 20919126  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 20927310 - 20927241
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatggact 437  Q
    |||||||||||||||||||||||||||||||||| | ||||||  || ||||||| || |||||||||||    
T  20927310 gccacatgtcagtcatctatgaggtgaaaagggaaaaatggagccttcttaaatgaagtaaagatggact 20927241  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 20928023 - 20928088
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    |||||||||||||||||||||||||||||||| | | |||||| ||| |||||||||| |||||||    
T  20928023 gccacatgtcagtcatctatgaggtgaaaaggaaaaaatggagttttcttaaatggagtaaagatg 20928088  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 34936785 - 34936720
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    |||||||||||   |||||||| ||||||||||||| |||||||| |  |||||||||||||||||    
T  34936785 gccacatgtcacaaatctatgaagtgaaaagggataaatggaggtatggtaaatggagcaaagatg 34936720  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 55444579 - 55444648
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatggact 437  Q
    |||||||||||  |||| || | ||||||||||||| ||||||  || ||||||| ||||||||||||||    
T  55444579 gccacatgtcacacatcaataaagtgaaaagggataaatggagcattcttaaatgaagcaaagatggact 55444648  T

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Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 18526902 - 18526971
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatggact 437  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||  ||||||||||||| |||||||    
T  18526902 gccacatgtcagtcatctatgaggtgaaaagggataaatgaaggcttcctaaatggagcaaatatggact 18526971  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 370 - 433
Target Start/End: Complemental strand, 18526663 - 18526600
Alignment:
Q  370 cacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    ||||||||||||||||||||| || | | ||||| |||||  ||||||||||||||||||||||    
T  18526663 cacatgtcagtcatctatgagctgcagatggataaatggaaattttttaaatggagcaaagatg 18526600  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 490
Target Start/End: Complemental strand, 42248382 - 42248330
Alignment:
Q  438 ttttagtcccataattataaagtatctcaatttaatcatataaatcttatgtc 490  Q
    |||| ||||||||| |||||||| |||||||||  || |||||||||||||||    
T  42248382 ttttggtcccataactataaagtgtctcaatttggtcctataaatcttatgtc 42248330  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 3635565 - 3635496
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatggact 437  Q
    ||||||||||||||||||||||| |||||||||| | ||| ||  || ||||||||||||||||||||||    
T  3635565 gccacatgtcagtcatctatgagatgaaaagggaaaaatgaagtcttcttaaatggagcaaagatggact 3635496  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 369 - 433
Target Start/End: Original strand, 3636395 - 3636459
Alignment:
Q  369 ccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    |||||||||||||||||||||| |||||||||| | ||||||  || ||||||||||||||||||    
T  3636395 ccacatgtcagtcatctatgagttgaaaagggaaaaatggagccttcttaaatggagcaaagatg 3636459  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 33529806 - 33529741
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    ||||||||||||||||||||||| ||||| |||||| || || | ||  |||||||||||||||||    
T  33529806 gccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatg 33529741  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 427
Target Start/End: Complemental strand, 3635672 - 3635613
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagca 427  Q
    ||||||||||||||||||||||| |||||||||| | ||| ||  || ||||||||||||    
T  3635672 gccacatgtcagtcatctatgagatgaaaagggaaaaatgaagtcttcttaaatggagca 3635613  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 48204075 - 48204140
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    ||||||||||||| |||||||||||||||||||| | ||||||  || |||||| |||||||||||    
T  48204075 gccacatgtcagttatctatgaggtgaaaagggaaaaatggagccttcttaaattgagcaaagatg 48204140  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 48203976 - 48203915
Alignment:
Q  369 ccacatgtcagtcatctatgaggtgaaaagggatagatggag-gttttttaaatggagcaaa 429  Q
    ||||||||||||||||||||||||||||||||| | || |||  ||| ||||||||||||||    
T  48203976 ccacatgtcagtcatctatgaggtgaaaagggaaaaattgagtctttcttaaatggagcaaa 48203915  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 490
Target Start/End: Original strand, 48754035 - 48754087
Alignment:
Q  438 ttttagtcccataattataaagtatctcaatttaatcatataaatcttatgtc 490  Q
    |||| |||||||||||||||||| | |||||||| || |||||||||||||||    
T  48754035 ttttggtcccataattataaagtgtttcaatttagtcctataaatcttatgtc 48754087  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 446 - 490
Target Start/End: Complemental strand, 7347289 - 7347245
Alignment:
Q  446 ccataattataaagtatctcaatttaatcatataaatcttatgtc 490  Q
    ||||||||||||||| |||||||||  || |||||||||||||||    
T  7347289 ccataattataaagtgtctcaatttggtcctataaatcttatgtc 7347245  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 518
Target Start/End: Original strand, 5993554 - 5993619
Alignment:
Q  453 tataaagtatctcaatttaatcatataaatcttatgtccttagattttttgcaaaatccattaact 518  Q
    |||||||||| | |||||  || |||||||| |||||||||||| |||||||||||||| ||||||    
T  5993554 tataaagtattttaatttggtcctataaatcctatgtccttagaatttttgcaaaatccgttaact 5993619  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 16871541 - 16871606
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    ||||||||||||||||||||||| ||||| |||||| || || | ||  |||||||||||||||||    
T  16871541 gccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatg 16871606  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 10140644 - 10140709
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    ||||||||||| |||||||| | ||||| |||| || || |||| || ||||||||||||||||||    
T  10140644 gccacatgtcattcatctattacgtgaacaggggtaaattgaggcttcttaaatggagcaaagatg 10140709  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 18065789 - 18065724
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    |||||||||||   |||||| | || |||||||||| ||||||||||  |||||||||||||||||    
T  18065789 gccacatgtcatatatctataaagtaaaaagggataaatggaggtttggtaaatggagcaaagatg 18065724  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 9483662 - 9483727
Alignment:
Q  368 gccacatgtcagtcatctatgaggtgaaaagggatagatggaggttttttaaatggagcaaagatg 433  Q
    |||||||||||  ||||||||| ||||||||||||| |||||   |||  ||||||||||||||||    
T  9483662 gccacatgtcacacatctatgaagtgaaaagggataaatggaacctttgcaaatggagcaaagatg 9483727  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 490
Target Start/End: Original strand, 53400224 - 53400276
Alignment:
Q  438 ttttagtcccataattataaagtatctcaatttaatcatataaatcttatgtc 490  Q
    |||| ||||||||| |||||||| |||||||||  || |||||||||||||||    
T  53400224 ttttggtcccataactataaagtgtctcaatttggtcctataaatcttatgtc 53400276  T

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