View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13072_low_3 (Length: 420)
Name: NF13072_low_3
Description: NF13072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13072_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 4410556 - 4410166
Alignment:
| Q |
14 |
gaattcggttccaacattactctcttgagctttcaaaaacttgttaacatagctattattatcaccaaaagttgcacacaaagggtttgagtttgaagta |
113 |
Q |
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| T |
4410556 |
gaattcggttccaacattactctcttgagctttcaaaaacttgttaacatagctattattatcaccaaaagttgcacacaaagggtttgagtttgaagta |
4410457 |
T |
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| Q |
114 |
tcatgccaattattgaatatgtatggaactattgcttctaaattttcttgaagaccgattctagccggaaccaaaaagtcattgttattaacaatgagat |
213 |
Q |
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| T |
4410456 |
tcatgccaattattgaatatgtatggaactattgcttctaaattttcttgaagaccgattctagccggaaccgaaaagtcattgttattaacaatgagat |
4410357 |
T |
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| Q |
214 |
ttgagggattttccacaatagtccttccttgttgtgatgtaacaaatgaattatcagctatggtaacttgattcatgaaactaccatcaacatgttgatc |
313 |
Q |
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| T |
4410356 |
ttgagggattttccacaatagtccttccttgttgtgatgtaacaaatgaattatcagctatggtaacttgattcatgaaactaccatcaacatgttgatc |
4410257 |
T |
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| Q |
314 |
ttgttcgccaccagaaagtattggaattccatttatgatgttgttttggttgttaaggtcaaatgaatagcaatgaatgagtggcttttgt |
404 |
Q |
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| T |
4410256 |
ttgttctccaccagaaagtattggaattccatttatgatgttgttttggttgttaaggtcaaatgaatagtaatgaatgagtggcttttgt |
4410166 |
T |
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