View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13072_low_4 (Length: 314)
Name: NF13072_low_4
Description: NF13072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13072_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 14460218 - 14460298
Alignment:
| Q |
118 |
aaatgaaacatgaggaaccgcgatcagaagtctatgaatttactacaaatcgaggaatttcaatggtcatgtttctctgag |
198 |
Q |
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| T |
14460218 |
aaatgaaacatgaggaaccgcgatcagaagtctatgaatttactacaaatcgaggaatttcaatggtcatgtttctctgag |
14460298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 14460129 - 14460193
Alignment:
| Q |
7 |
agattattcttggacaagggaaaaccataacccaaacttaatcaattaatcaaatcagttctagt |
71 |
Q |
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| T |
14460129 |
agataattcttggacaagggaaaaccataacccaaacttaatcaattaatcaaatcagttctagt |
14460193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 14460344 - 14460399
Alignment:
| Q |
244 |
ctataatcgagcaacaatcattgaagaaaaataattaaaaatatatacatcaaaac |
299 |
Q |
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| T |
14460344 |
ctataatcgagcaacaatcattgatgaaaaataattaaaaatatatacatcaaaac |
14460399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 14468533 - 14468581
Alignment:
| Q |
248 |
aatcgagcaacaatcattgaagaaaaataattaaaaatatatacatcaaaac |
299 |
Q |
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| T |
14468533 |
aatccagcaacaatcattgaacaaaaataattaaa---atatacatcaaaac |
14468581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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