View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13073_high_1 (Length: 443)

Name: NF13073_high_1
Description: NF13073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13073_high_1
NF13073_high_1
[»] chr1 (1 HSPs)
chr1 (1-443)||(52511842-52512305)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 52511842 - 52512305
Alignment:
Q  1 tagtatacataccttctaagaatttggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52511842 tagtatacataccttctaagaattgggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgttt 52511941  T
Q  101 ggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatctgtcaatttagtcgtttactaagnnnnnnngaaatgagcaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||    
T  52511942 ggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatcagtcaatttagtcgtttactaagaaaaaaagaaatgagcaaa 52512041  T
Q  201 gtagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccac 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512042 ttagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccac 52512141  T
Q  301 cacacatatcacct----------aaatgaaaagtagtattataataaggaagaagaatattattat-----------taaaaaagaatgaggagaaaag 379  Q
    ||||||||||||||          ||||||||||||||||||||||||||||||| | |||||||||           ||| ||||||||| ||||||||    
T  52512142 cacacatatcacctaaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaag 52512241  T
Q  380 agaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatca 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512242 agaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatca 52512305  T

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