View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13073_high_4 (Length: 365)
Name: NF13073_high_4
Description: NF13073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13073_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 4648505 - 4648884
Alignment:
| Q |
1 |
gtatgaacgtctcattaaatgatttttaagtacaagaatccggctcatacgtctcattaaatattttattcgaattgaataggatttctttttcttaaag |
100 |
Q |
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| T |
4648505 |
gtatgaacgtctcattaaatgatttttaagtacaagaatccggctcatacgtctcattaaatattttattcgaattgaataggatttctttttcttaaag |
4648604 |
T |
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| Q |
101 |
ttgttttattcgaagnnnnnnnnctacaagacgaagagtagaaacttcactaacaacaactaatataacaatcgataaggagtaaaaactcaagtaa--a |
198 |
Q |
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| T |
4648605 |
ttgttttattcgaagaaaaaaaactacaagacgaagagtagaaacttcactaacaacaactaatataacaatcgataaggagtaaaaactcaagtaaaca |
4648704 |
T |
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| Q |
199 |
ctaagaatcctcactatcatatctcatatctattcgaacccgatt----------------------atcacaaaagttcttaaaaacttgttatatctt |
276 |
Q |
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| T |
4648705 |
ctaagaatcctcactatcatatctcatatctattcgaacccgattatctatatgtcatgtgcctttcatcacaaaagttcttaaaaacttgttatatctt |
4648804 |
T |
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| Q |
277 |
ttaatgaagagactcatctctttatcacttgagacatcattgttatcactatttctccttgtcctttgtccatattcttc |
356 |
Q |
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| T |
4648805 |
ttaatgaagagactcatctctttatcacttgagacatcattgttatcactatttctccttgtcctttgtccattttcttc |
4648884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 23692894 - 23692816
Alignment:
| Q |
255 |
tcttaaaaacttgttatatcttttaatgaagagactcatctctttatcacttgagacatcattgttatcactatttctc |
333 |
Q |
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| T |
23692894 |
tcttaagaatttgttatatctattaatgaagagactcacctctttatcacttgagacatcatcgttatcactatttctc |
23692816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 23697013 - 23697051
Alignment:
| Q |
69 |
ttcgaattgaataggatttctttttcttaaagttgtttt |
107 |
Q |
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| T |
23697013 |
ttcgaattgaataggatttctttttcttaaagttgtttt |
23697051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 4648454 - 4648416
Alignment:
| Q |
69 |
ttcgaattgaataggatttctttttcttaaagttgtttt |
107 |
Q |
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| T |
4648454 |
ttcgaattgaataggatttcttttacttaaagttgtttt |
4648416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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