View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13073_high_6 (Length: 303)

Name: NF13073_high_6
Description: NF13073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13073_high_6
NF13073_high_6
[»] chr1 (1 HSPs)
chr1 (1-293)||(10437975-10438266)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 10438266 - 10437975
Alignment:
Q  1 attttttcacaaaacagattgtcatggaacttccggttgaacacggcttacttttggacaaccttttggatcttgcgcacgccccttttactcatacttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10438266 attttttcacaaaacagattgtcatggaacttccggttgaacacggcttacttttggacaaccttttggatcttgcgcacgccccttttactcatacttc 10438167  T
Q  101 aacatttgctaagggatggagtgttcccaggtttgtatcgtttaataccctttaaagtgatatgattcaatatgtgaaaatgaaattgatttaagttctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10438166 aacatttgctaagggatggagtgttcccaggtttgtatcgttta-taccctttaaagtgatatgattcaatatgtgaaaatgaaattgatttaagttctt 10438068  T
Q  201 caaaatagccaatttgttataacaaactcttagaagcctttttcttttgacaacattatggtaaatgtattgcagtgctatgttttttctgtg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10438067 caaaatagccaatttgttataacaaactcttagaagcctttttcttttgacaacattatggtaaatgtattgcagtgctatgttttttctgtg 10437975  T

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