View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13074_low_4 (Length: 280)
Name: NF13074_low_4
Description: NF13074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13074_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 748506 - 748785
Alignment:
| Q |
1 |
ttccaaacttgaagtggcataacatagatagaaaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcg |
100 |
Q |
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| T |
748506 |
ttccaaacttgaagtggcataacatagatagaaaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcg |
748605 |
T |
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| Q |
101 |
agtctcgagtggaaatgtctcacttggaataagccaaccgagaggaccccaagaccaagcgaaggcagacacgaaagtgcataccaatataacaacaaaa |
200 |
Q |
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| T |
748606 |
agtctcgagtggaaatgtctcacttggaataagccaaccgagaggaccccaagaccaagcaaaggcagacacgaaagtgcataccaagataacaacaaat |
748705 |
T |
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| Q |
201 |
attgcatagccttttgaaagatcgtcagaatgatcagtcaccttgatcccaagaatgattgctatcacaagttgagacaa |
280 |
Q |
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| T |
748706 |
attgcatagccttttgaaagatcgtcagaatgatcagtcaccttgatcccaagaatgattgctatcacaatttgagacaa |
748785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 47212721 - 47212518
Alignment:
| Q |
65 |
gttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataagccaaccgagaggaccccaagaccaagcgaag |
164 |
Q |
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| T |
47212721 |
gttgacacaaactgttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaat |
47212622 |
T |
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| Q |
165 |
gcagacacgaaagtgcataccaatataacaacaaaaattgcatagccttttgaaagatcgtcagaatgatcagtcaccttgatcccaagaatgattgcta |
264 |
Q |
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| T |
47212621 |
gctgacacaaaaatacaaaccataacaactacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgcta |
47212522 |
T |
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| Q |
265 |
tcac |
268 |
Q |
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|||| |
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| T |
47212521 |
tcac |
47212518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 47186157 - 47186001
Alignment:
| Q |
1 |
ttccaaacttgaagtggcataacatagatagaaaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcg |
100 |
Q |
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|||||||||| | |||||| ||||| || | ||||| |||||||| | ||| |||||||||||||| | | || || ||||||||||||||||||| |
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| T |
47186157 |
ttccaaacttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
47186058 |
T |
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| Q |
101 |
agtctcgagtggaaatgtctcacttggaataagccaaccgagaggaccccaagacca |
157 |
Q |
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| T |
47186057 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgacca |
47186001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 47198664 - 47198540
Alignment:
| Q |
33 |
aaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataa |
132 |
Q |
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||||| |||||||| | ||| |||||||||||||| | | || || ||||||||||||||||||| |||||| | |||||||||||||| ||||| | |
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| T |
47198664 |
aaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaatgtctcactaggaatta |
47198565 |
T |
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| Q |
133 |
gccaaccgagaggaccccaagacca |
157 |
Q |
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|||||| || |||||||| ||||| |
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| T |
47198564 |
accaaccaagtggaccccatgacca |
47198540 |
T |
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