View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13074_low_5 (Length: 243)
Name: NF13074_low_5
Description: NF13074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13074_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10238151 - 10237927
Alignment:
| Q |
1 |
tatatatagagcttgtaagatgacatgcttagatattttcagtcctcaagtcaagagggaaagggggtcttcctaaatcttacatgttatttcttctagn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10238151 |
tatatatagagcttgtaagatgacatgcttagatattttcagtcctcaagtcaagagggaaagagggtcttcctaaatcttacatgttatttcttctaga |
10238052 |
T |
|
| Q |
101 |
nnnnnnctcaatatacaacaatggatgagtaaatcatttaacatttgagaaattgagattattctaccgtccattggatatacaaagcacataaaatcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10238051 |
aaaaaactcaatatacaacaatggatgagtaaatcatttaacatttgagaaattgagattattctaccgtccattgg--atacaaagcacataaaatcca |
10237954 |
T |
|
| Q |
201 |
tttagatgacccacg--aagctcaaat |
225 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
10237953 |
tttagatgacccacgttaagctcaaat |
10237927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 10261766 - 10261598
Alignment:
| Q |
4 |
atatagagcttgtaagatgacatgcttagatattttcagtcctcaa-gtcaagagggaaagggggtcttcctaaatcttacatgttatttcttctagnnn |
102 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||| | || ||||||||| |
|
|
| T |
10261766 |
atatagagcttataagatgacatgcttagatattttccgtcctcaaagtcaag--ggaaagggtgtcttcctaaatcttactttttttttcttcta--aa |
10261671 |
T |
|
| Q |
103 |
nnnnctcaatatacaacaatggatgagtaaatcatttaacatttgagaaattgagattattctaccgtccatt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
10261670 |
aaacctcaatatacaacaatggatgagtaaatcatttaacatttgagaaattgaaattattcgaccgtccatt |
10261598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University