View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13074_low_6 (Length: 225)
Name: NF13074_low_6
Description: NF13074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13074_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 12165328 - 12165434
Alignment:
| Q |
105 |
attattagtagtattatatcttaccataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatg |
204 |
Q |
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| T |
12165328 |
attattagtagtattaaatcttaccataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatg |
12165427 |
T |
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| Q |
205 |
gtctctg |
211 |
Q |
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| T |
12165428 |
gtctctg |
12165434 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 14216843 - 14216885
Alignment:
| Q |
26 |
ctatgaagcacggatgcggacacagacactgacacggatactga |
69 |
Q |
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| T |
14216843 |
ctatgaagcacggatgcggacacagacac-gacacggacactga |
14216885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 14222972 - 14223014
Alignment:
| Q |
26 |
ctatgaagcacggatgcggacacagacactgacacggatactga |
69 |
Q |
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| T |
14222972 |
ctatgaagcacggatgcggacacagacac-gacacggacactga |
14223014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 19213773 - 19213807
Alignment:
| Q |
26 |
ctatgaagcacggatgcggacacagacactgacac |
60 |
Q |
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| T |
19213773 |
ctatgaagcacggatgcggacacggacactgacac |
19213807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 25791616 - 25791650
Alignment:
| Q |
27 |
tatgaagcacggatgcggacacagacactgacacg |
61 |
Q |
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| T |
25791616 |
tatgaagcacggatacggacacagacactgacacg |
25791650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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