View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13075_high_11 (Length: 471)

Name: NF13075_high_11
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13075_high_11
NF13075_high_11
[»] chr3 (4 HSPs)
chr3 (138-344)||(19768748-19768954)
chr3 (194-414)||(29199150-29199369)
chr3 (1-105)||(19768592-19768696)
chr3 (4-82)||(29200134-29200212)
[»] chr4 (6 HSPs)
chr4 (1-105)||(37616591-37616695)
chr4 (1-70)||(1659810-1659879)
chr4 (1-70)||(32226087-32226156)
chr4 (287-414)||(25901099-25901225)
chr4 (170-229)||(5478209-5478268)
chr4 (268-306)||(50227378-50227416)
[»] chr8 (2 HSPs)
chr8 (170-229)||(2685044-2685103)
chr8 (410-460)||(6174362-6174412)
[»] chr2 (1 HSPs)
chr2 (170-229)||(45008469-45008528)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 138 - 344
Target Start/End: Original strand, 19768748 - 19768954
Alignment:
Q  138 agccattatcgttgtgggacctatccgtcaatgaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttgagaagctga 237  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19768748 agccattatcgttgtggaacctatccgtcaatgaatttgaggcaggg-agaggaaccttaaatcatgtgcaaactgagaaggagaaatttgagaagctga 19768846  T
Q  238 ttttgtttg-agcttgaatctgacagagaaaggttcttatgggtaaattttcttcttccacttttatttgnnnnnnnctcatctattttgctatagaaga 336  Q
    |||| |||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  19768847 ttttttttttagcttgaatctgacggagaaaggttcttatgggtaaattttcttcttccacttttatttgtttctttctcatctattttgctatagaaga 19768946  T
Q  337 aactataa 344  Q
    ||||||||    
T  19768947 aactataa 19768954  T

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Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 194 - 414
Target Start/End: Original strand, 29199150 - 29199369
Alignment:
Q  194 cttaaatcatgtgcaaaatgagaaggagaaatttgagaagctgattttgtttgagcttgaatctgacagagaaaggttcttatgggtaaattttcttctt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| |||| |||||||||    
T  29199150 cttaaatcatgtgcaaaatgagaaggagaaatttgagaagctgattttgtttgaatttgaatctgacggagaaaggttcttatggataaagtttcttctt 29199249  T
Q  294 ccacttttatttgnnnnnnnctcatctattttgctatagaagaaactataagagttggatcttcatgttctcttattcatannnnnnnctcttatgattt 393  Q
    |||||||||||||       |||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||       |||||  |||||    
T  29199250 ccacttttatttgtttctttctcatctattttgctatagaagaaactagaacagttggatcgtcatgttctcttattcata-ttttttctctttagattt 29199348  T
Q  394 atctatattgaaattgttcac 414  Q
    |||||||||||||||||||||    
T  29199349 atctatattgaaattgttcac 29199369  T

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Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 19768592 - 19768696
Alignment:
Q  1 tgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaaatcatgtactcatgcctctaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  19768592 tgatatctattggtatgttcaattatattatgcagattttagtttctaacatgttaaaattaagttatatcaattaactcatgtactgatgcctctaaaa 19768691  T
Q  101 ctatc 105  Q
    |||||    
T  19768692 ctatc 19768696  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 29200134 - 29200212
Alignment:
Q  4 tatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaaatcat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  29200134 tatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaaataagttatatcaattaactcat 29200212  T

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Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 37616695 - 37616591
Alignment:
Q  1 tgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaaatcatgtactcatgcctctaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37616695 tgatatctattggtatgttcaattatattatgcagatttaagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaa 37616596  T
Q  101 ctatc 105  Q
    |||||    
T  37616595 ctatc 37616591  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1659879 - 1659810
Alignment:
Q  1 tgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat 70  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  1659879 tgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat 1659810  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32226156 - 32226087
Alignment:
Q  1 tgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat 70  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  32226156 tgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat 32226087  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 287 - 414
Target Start/End: Complemental strand, 25901225 - 25901099
Alignment:
Q  287 tcttcttccacttttatttgnnnnnnnctcatctattttgctatagaagaaactataagagttggatcttcatgttctcttattcatannnnnnnctctt 386  Q
    ||||||||||||||||||||       |||||||||||||| ||||||||||||| || || ||| ||||||||||||||||||||||       |||||    
T  25901225 tcttcttccacttttatttgtttctttctcatctattttgccatagaagaaactagaatagatgggtcttcatgttctcttattcata-ctttttctctt 25901127  T
Q  387 atgatttatctatattgaaattgttcac 414  Q
      |||||||||| |||||||||||||||    
T  25901126 gagatttatctacattgaaattgttcac 25901099  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 5478209 - 5478268
Alignment:
Q  170 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttga 229  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  5478209 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 5478268  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 50227416 - 50227378
Alignment:
Q  268 ggttcttatgggtaaattttcttcttccacttttatttg 306  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  50227416 ggttcttatgggtaaagtttcttctttcacttttatttg 50227378  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 2685103 - 2685044
Alignment:
Q  170 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttga 229  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  2685103 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 2685044  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 460
Target Start/End: Complemental strand, 6174412 - 6174362
Alignment:
Q  410 ttcacttttctcacctttcaacagagacaaaagtttttcggtgatgatgat 460  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  6174412 ttcacttttctcacctttcaacagagacaaaagttttccagtgatgatgat 6174362  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 45008528 - 45008469
Alignment:
Q  170 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttga 229  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  45008528 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 45008469  T

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