View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13075_high_13 (Length: 388)

Name: NF13075_high_13
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13075_high_13
NF13075_high_13
[»] chr5 (9 HSPs)
chr5 (89-374)||(1759281-1759557)
chr5 (20-96)||(1758982-1759058)
chr5 (20-96)||(38866863-38866939)
chr5 (20-94)||(29169474-29169548)
chr5 (22-81)||(32432225-32432284)
chr5 (20-77)||(29426443-29426500)
chr5 (20-77)||(29566527-29566584)
chr5 (20-82)||(29250555-29250617)
chr5 (182-242)||(1754206-1754265)
[»] chr4 (31 HSPs)
chr4 (89-249)||(27505659-27505809)
chr4 (89-249)||(27479934-27480084)
chr4 (89-249)||(27523360-27523510)
chr4 (89-249)||(27526069-27526219)
chr4 (89-248)||(27516567-27516716)
chr4 (20-94)||(18987882-18987956)
chr4 (89-248)||(27473925-27474074)
chr4 (20-86)||(27463160-27463226)
chr4 (20-86)||(27471759-27471825)
chr4 (20-86)||(27483532-27483598)
chr4 (89-271)||(27487016-27487188)
chr4 (20-86)||(27519798-27519864)
chr4 (98-251)||(27513731-27513874)
chr4 (89-249)||(27460511-27460661)
chr4 (89-249)||(27469493-27469643)
chr4 (121-249)||(27502092-27502210)
chr4 (89-249)||(27476720-27476870)
chr4 (178-236)||(27444764-27444822)
chr4 (178-248)||(27466933-27467003)
chr4 (100-234)||(27557533-27557657)
chr4 (178-247)||(27567367-27567436)
chr4 (89-236)||(27498448-27498585)
chr4 (275-333)||(27474102-27474160)
chr4 (98-236)||(27431118-27431246)
chr4 (98-235)||(27501359-27501486)
chr4 (178-249)||(27500295-27500366)
chr4 (280-346)||(27469688-27469754)
chr4 (178-236)||(27554421-27554479)
chr4 (178-213)||(27495648-27495683)
chr4 (89-141)||(27500393-27500445)
chr4 (178-242)||(27507777-27507841)
[»] chr3 (4 HSPs)
chr3 (20-82)||(25520161-25520223)
chr3 (178-236)||(50904762-50904820)
chr3 (178-240)||(38028732-38028794)
chr3 (178-240)||(38040047-38040109)
[»] chr8 (1 HSPs)
chr8 (178-240)||(21604720-21604782)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 89 - 374
Target Start/End: Original strand, 1759281 - 1759557
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      |||||    
T  1759281 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaatttgaatacaaccatccaat------gggtg 1759374  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatcaaaagaccaatttttgta 288  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||    
T  1759375 gtctcaccattctttgcagagaagaagttttcttagatatcacttctcacttgaattgaatcagc---tctctgaaaatatcaaaagaccaatttttgta 1759471  T
Q  289 caactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaacttcatatttctataattcttctctgat 374  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1759472 gaactttagtttcttaccttcaaaagatttttacttttcttgttacttggatgtaaaacttcatatttctataattcttctctgat 1759557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 1758982 - 1759058
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758982 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct 1759058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 38866939 - 38866863
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct 96  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||  ||| |||||||||||||    
T  38866939 gatatgaggttctaatatgtgcaaacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattcct 38866863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 29169474 - 29169548
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattc 94  Q
    |||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||    
T  29169474 gatatgagattctaatatgtgcaaacaattgttactacaagttggtctagaagaatcattatgtttaattgattc 29169548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 32432225 - 32432284
Alignment:
Q  22 tatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtat 81  Q
    |||||||||||||| |||||||||||||||||||||||| || | |||||||||||||||    
T  32432225 tatgaggttctaatatgtgcaaacaattgttactacaagttggtgtagaagaatcagtat 32432284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 29426443 - 29426500
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca 77  Q
    ||||||||||||||||||||||||||||||||||||||||| || | || ||||||||    
T  29426443 gatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca 29426500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 29566584 - 29566527
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca 77  Q
    ||||||||||||||||||||||||||||||||||||||||| || | || ||||||||    
T  29566584 gatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca 29566527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 29250555 - 29250617
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatg 82  Q
    |||||||||||||||| ||||| |||||||| ||||||||| || | || |||||||||||||    
T  29250555 gatatgaggttctaatatgtgctaacaattgctactacaagttggtttacaagaatcagtatg 29250617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 1754265 - 1754206
Alignment:
Q  182 atgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttga 242  Q
    |||||||||||||| |||| ||| |||||| || ||||||||||||||||||||| |||||    
T  1754265 atgggtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgcttga 1754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 89 - 249
Target Start/End: Complemental strand, 27505809 - 27505659
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||    |||||||||||||||||||||||||  ||||||||||      |||||    
T  27505809 tgattcctgtatcatacttgaaccaaacctcattccaagaattgttga----accaagctgaggaacaatttgaatatgaccatccaat------gggtg 27505720  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 249  Q
    ||||||| |||| ||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  27505719 gtctcactattccttgcagagaagagattttcttagatatcatttctcacttgaattgaat 27505659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 27479934 - 27480084
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||||||||||||||| || |||||||||||||||||| | |||||||    |||||||||||||||||||||||||  | ||||||      |||||||    
T  27479934 tgattcctgtatcatacttgaaccaaacatcattccaaaagttgttga----accaagctgaggaacaatttgaatatgatcatcca------atgggtg 27480023  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 249  Q
    |||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  27480024 gtctcaccattccttgcagagaagacattttcttagatattaattctcacttgaattgaat 27480084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 89 - 249
Target Start/End: Complemental strand, 27523510 - 27523360
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||| ||    || |||||||||||||||||  ||||||||||      |||||    
T  27523510 tgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcgaa----gccgaggaacaatttgaatatgaccatccaat------gggtg 27523421  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 249  Q
    |||| || |||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  27523420 gtctaactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaat 27523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 89 - 249
Target Start/End: Complemental strand, 27526219 - 27526069
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||||||||||||||| || |||||||| ||||||||||||||||||||||||    ||||||||||||||||||||  | |||||||       |||||    
T  27526219 tgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaa----gctgaggaacaatttgaatatgatcatccaac------gggtg 27526130  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 249  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||||||  |||||||||||    
T  27526129 gtctcactattccttgcagagaagacgttttcttagagatcacttctcgtttgaattgaat 27526069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 27516716 - 27516567
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||| ||| |||||||||| || |||| ||||||||||||||||||||    |||||||||||||||||||||||||  ||||||||||      ||| |    
T  27516716 tgatccctatatcatatttgaagcaaaaatcattccaagaattgttga----accaagctgaggaacaatttgaatatgaccatccaat------ggggg 27516627  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 248  Q
    ||||||| |||| ||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  27516626 gtctcactattccttgcaaagaagaagttttcttagatatcacttctaacttgaattgaa 27516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 18987882 - 18987956
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattc 94  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||    
T  18987882 gatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgcttaatagattc 18987956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 27473925 - 27474074
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||| ||| |||||||||| || |||| |||||||||||||||| ||||||||   || ||||||||||||||||||  | ||||||      |||||||    
T  27473925 tgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtg 27474014  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 248  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||    
T  27474015 gtctcaccattccttgcggagaagacgttttcttagacatcacttctcgcttgaattgaa 27474074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 27463160 - 27463226
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgctta 86  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27463160 gatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgctta 27463226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 27471759 - 27471825
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgctta 86  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27471759 gatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgctta 27471825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 27483532 - 27483598
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgctta 86  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27483532 gatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgctta 27483598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 89 - 271
Target Start/End: Original strand, 27487016 - 27487188
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||| ||| ||||||| ||||||||| |||| || |||||||||||||    |||||||||| ||||||||||||||  | ||||||      |||||||    
T  27487016 tgatccctttatcatacttaaaccaaccatcgtttcaagaattgttga----accaagctgaagaacaatttgaatatgatcatcca------atgggtg 27487105  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatca 271  Q
    |||| || |||| ||||| ||||||| ||||||||||||| |||||||||||||||||||| |  || ||| |||||||||||    
T  27487106 gtcttactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaattattagttctttgaagatatca 27487188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 27519864 - 27519798
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgctta 86  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27519864 gatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgctta 27519798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 27513874 - 27513731
Alignment:
Q  98 tatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcacca 197  Q
    ||||||| || |||||||| || ||||||||||||||||    |||||||||| ||||||| ||||||  | ||||||||      |||||||||||| |    
T  27513874 tatcatacttgaaccaaacctcgttccaagaattgttga----accaagctgaagaacaatatgaatatgatcatccaat------gggtggtctcacta 27513785  T
Q  198 ttctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatca 251  Q
    ||| |||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  27513784 ttccttgcagagaagaagtattcttagatatcacttctcgcttgaattgaatca 27513731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 27460511 - 27460661
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||| ||| |||||||||| || |||| |||||||||||||||| ||||||||   || ||||||||||||||||||  | ||||||      |||||||    
T  27460511 tgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtg 27460600  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 249  Q
    |||||||||||| ||||||||||||| ||||||| |||||||| |||||||| | ||||||    
T  27460601 gtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaat 27460661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 27469493 - 27469643
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||| ||| |||||||||| || ||||||||||| |||||| |||||||||||    ||||| ||||||||||||||  | ||||||      |||||||    
T  27469493 tgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaa----gctgaagaacaatttgaatatgaacatcca------atgggtg 27469582  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 249  Q
    |||| || |||| ||||||||||||  |||||||||||||||| |||||||| ||||||||    
T  27469583 gtctaactattccttgcagagaagaaattttcttagatatcacctctcacttcaattgaat 27469643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 249
Target Start/End: Complemental strand, 27502210 - 27502092
Alignment:
Q  121 ttccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcagagaagacgttttc 220  Q
    ||||||||||||||||    |||||||||||||||||||||||||  | ||||||||      ||||||||| || |||| ||||||||||||| |||||    
T  27502210 ttccaagaattgttga----accaagctgaggaacaatttgaatatgatcatccaat------gggtggtctaactattccttgcagagaagacattttc 27502121  T
Q  221 ttagatatcacttctcacttgaattgaat 249  Q
    ||||||||||| |||||||| ||||||||    
T  27502120 ttagatatcacctctcacttaaattgaat 27502092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 27476720 - 27476870
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||||||||||||||| || |||||||| |||||||||||| || ||||||||   || ||||||||||||||||||  | ||||||      |||||||    
T  27476720 tgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtg 27476809  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 249  Q
    |||| || |||| ||||||||||||| ||||||| ||||| || |||||||| ||||||||    
T  27476810 gtctaactattccttgcagagaagacattttcttggatattacctctcacttaaattgaat 27476870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 27444822 - 27444764
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 236  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  27444822 tccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 27444764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 27466933 - 27467003
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 248  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||  |||||||||||    
T  27466933 tccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaattgaa 27467003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 27557533 - 27557657
Alignment:
Q  100 tcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccatt 199  Q
    ||||| ||||||||| ||||||| ||||||||| |||    | |||||||||||||||||||||||    ||||||      |||||||||||||| |||    
T  27557533 tcatacttaaaccaaccatcatttcaagaattgctga----atcaagctgaggaacaatttgaatatgttcatcca------atgggtggtctcactatt 27557622  T
Q  200 ctttgcagagaagacgttttcttagatatcacttc 234  Q
    |  ||||||||||| ||||||||||||||||||||    
T  27557623 ccatgcagagaagatgttttcttagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 27567367 - 27567436
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattga 247  Q
    |||||||||||||||||| |||| |||||| ||||| | |||||||||  ||||||||||||||||||||    
T  27567367 tccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattga 27567436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 27498448 - 27498585
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 188  Q
    |||| ||| ||||||| || |||||| |||| |||||||| |||||||    ||||||| ||||||||||| |||||  | ||||||      |||||||    
T  27498448 tgatccctatatcatacttgaaccaaccatcgttccaagacttgttga----accaagccgaggaacaattcgaatatgatcatcca------atgggtg 27498537  T
Q  189 gtctcaccattctttgcagagaagacgttttcttagatatcacttctc 236  Q
    ||||||| |||| |||| |||||||| | |||||||||||||||||||    
T  27498538 gtctcactattccttgcggagaagacatgttcttagatatcacttctc 27498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 27474102 - 27474160
Alignment:
Q  275 gaccaatttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgtta 333  Q
    ||||||||||||||  |||||||||||| |||||||||||||||| |||||| ||||||    
T  27474102 gaccaatttttgtagcactttagtttctaaccttcaaaagattttcacttttgttgtta 27474160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 27431246 - 27431118
Alignment:
Q  98 tatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcacca 197  Q
    ||||||| || |||||| | ||||| |||||||||||||    | ||||| ||||||||||||| |||  |||||||||  ||    ||||||||||| |    
T  27431246 tatcatacttgaaccaaccgtcatttcaagaattgttga----atcaagccgaggaacaatttggatatgaccatccaa--cc----ggtggtctcacaa 27431157  T
Q  198 ttctttgcagagaagacgttttcttagatatcacttctc 236  Q
    ||| |||||||||||||||||||||| |||| |||||||    
T  27431156 ttccttgcagagaagacgttttcttaaatattacttctc 27431118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 27501359 - 27501486
Alignment:
Q  98 tatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcacca 197  Q
    ||||||| ||||||||| |||  || ||||| |||||||    ||||||| |||||||||||||||||| | |||||||       |||||||||||| |    
T  27501359 tatcatacttaaaccaaccattgtttcaagacttgttga----accaagccgaggaacaatttgaatacgatcatccaac------gggtggtctcacta 27501448  T
Q  198 ttctttgcagagaagacgttttcttagatatcacttct 235  Q
    ||| ||| ||||||||| | ||||||||||||||||||    
T  27501449 ttccttgtagagaagacatgttcttagatatcacttct 27501486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 27500366 - 27500295
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 249  Q
    ||||||||||||  |||| |||| ||||||||||||| ||||||||||  ||||||||  ||||||||||||    
T  27500366 tccaatgggtggcatcactattccttgcagagaagaccttttcttagaattcacttcttgcttgaattgaat 27500295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 27469688 - 27469754
Alignment:
Q  280 atttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaa 346  Q
    |||||||||  ||||||||||| ||||||||||||||||| |||||| |||| | ||| ||||||||    
T  27469688 atttttgtagcactttagtttcataccttcaaaagattttcacttttgttgtaatttggatgtaaaa 27469754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 27554421 - 27554479
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 236  Q
    ||||| |||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  27554421 tccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctc 27554479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 27495648 - 27495683
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaaga 213  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27495648 tccaatgggtggtctcaccattccttgcagagaaga 27495683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 27500445 - 27500393
Alignment:
Q  89 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaa 141  Q
    |||| ||| ||||||| ||||||||||  ||||||||||||||| ||||||||    
T  27500445 tgatccctatatcatacttaaaccaaagttcattccaagaattgctgagccaa 27500393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 27507841 - 27507777
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttga 242  Q
    ||||||||||||||| || |||| |||   ||||||  ||||||||||||||||||||| |||||    
T  27507841 tccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgcttga 27507777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 25520161 - 25520223
Alignment:
Q  20 gatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatg 82  Q
    ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||    
T  25520161 gatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtagaagaatcactatg 25520223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 50904820 - 50904762
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 236  Q
    |||||||||||| |||||||||| |||||||||||| ||||| ||  ||||||||||||    
T  50904820 tccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctc 50904762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 38028794 - 38028732
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 240  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  38028794 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38028732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 38040109 - 38040047
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 240  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  38040109 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38040047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 21604782 - 21604720
Alignment:
Q  178 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 240  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  21604782 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 21604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University