View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_high_15 (Length: 373)
Name: NF13075_high_15
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 362
Target Start/End: Original strand, 9313368 - 9313718
Alignment:
| Q |
12 |
atcaatgtatatatggtagtgactcgaagcttgtgtaattttctatgtgtgaatccttgcactcattcaagcattaaccgtggcgtttaaccattcactt |
111 |
Q |
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| T |
9313368 |
atcaatgtatatatggtagtgactcgaagcttgtgtaattttctctgtgtgaatccttgcactcattcaagcattaaccgtggcgtttaaccattcactt |
9313467 |
T |
|
| Q |
112 |
catccatccattcatttttgtgttccacttccatattgcgttgaaacatatattttgcactaatttatttacctccatagatatagtcattcataagttt |
211 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9313468 |
catccatccattcattttcgtgttccacttccatattgcattgaagcatatattttgcactaatttatttacctccatagatatagtcattcataagttt |
9313567 |
T |
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| Q |
212 |
tactgggcaacttgcggaaaccaatattcctctccatttcagaatcttccttctttcaattgattctggatccaagcttattctagtatggttttgcaaa |
311 |
Q |
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| T |
9313568 |
tactgagcaacttgcggaaaccaatattcctctccatttcagaatcttcattctttcaattgattctggatccaagcttattctagtatggttttgcaaa |
9313667 |
T |
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| Q |
312 |
tctggcgtgcattcaataattttggaacttatccttcgttgtgtttttcat |
362 |
Q |
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| T |
9313668 |
tctggcgtgcattcaataattttggaacttatccttcgttgtgtttttcat |
9313718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 9288802 - 9288994
Alignment:
| Q |
12 |
atcaatgtatatatggtagtgactcgaagcttgtgtaattttctatgtgtgaatccttgcactcattcaagcattaaccgtggcgtttaaccattcactt |
111 |
Q |
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| T |
9288802 |
atcaatgtctatatggtattgacttgaagcttgtgtaattttctatgtgtgaatccttgtactcattcaagcattaaccgtggcatttaaccattctctt |
9288901 |
T |
|
| Q |
112 |
catccatccattcatttttgtgttccacttccatattgcgttgaaacatatattt-tgcactaatttatttacctccat-agatatagtcatt |
202 |
Q |
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| T |
9288902 |
catccatccattcattttcgtgttccacttccatattgcattgaagcatatgtttgtgcactaatttattcacctctataaaatatagtcatt |
9288994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 9289025 - 9289134
Alignment:
| Q |
253 |
gaatcttccttctttcaattgattctggatccaagcttattctagtatggttttgcaaatctggcgtgcattcaataattttggaacttatccttcgttg |
352 |
Q |
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| T |
9289025 |
gaatcttccttcgatcaattgattctggatctgagcttattcttgtatggttttgcaaatctggcgtgcattcaataactttggaacttatccttcattg |
9289124 |
T |
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| Q |
353 |
tgtttttcat |
362 |
Q |
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|||||||||| |
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| T |
9289125 |
tgtttttcat |
9289134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 362
Target Start/End: Complemental strand, 9076236 - 9076067
Alignment:
| Q |
200 |
attcataagttttactgggcaacttgcggaaaccaatattcctctccatttcagaatcttccttctttcaattgattctggatccaagcttattctagta |
299 |
Q |
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||||| ||||||| || | ||||| | |||||||||||| ||||||||| | ||||||| ||||||||||||||| |||||| ||||||||| | ||| |
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| T |
9076236 |
attcacaagtttttctagccaactcggggaaaccaatatctctctccattcaacaatcttctttctttcaattgattatggatctaagcttatttttgta |
9076137 |
T |
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| Q |
300 |
tggttttgcaaatctggcgtgcattca-------ataattttggaacttatccttcgttgtgtttttcat |
362 |
Q |
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| T |
9076136 |
tggttttgcaaatttggtgtttattcaataaaatataattttggaacttatccttcgttgtatttttcat |
9076067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 9064368 - 9064259
Alignment:
| Q |
16 |
atgtatatatggtagtgactcgaagcttgtgtaattttctatgtgtgaatccttgcactcattcaagcattaaccgtggcgtttaaccattcacttcatc |
115 |
Q |
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|||||||||||||| ||||| ||| ||||||| ||| || ||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||| |
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| T |
9064368 |
atgtatatatggtattgacttgaactttgtgtacgtttatacgtgtgaatccttgcactcattcaagcattaatcatggcatttaaccattctcttcatt |
9064269 |
T |
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| Q |
116 |
catccattca |
125 |
Q |
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| T |
9064268 |
catccattca |
9064259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 9064138 - 9064043
Alignment:
| Q |
200 |
attcataagttttactgggcaacttgcggaaaccaatattcctctccatttcagaatcttccttctttcaattgattctggatccaagcttattct |
295 |
Q |
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| T |
9064138 |
attcacaagtttttctagccaactcggggaaaccgatattcctctccatttcagaatcttctttctttcatttgattatggatctaagctgattct |
9064043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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