View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_high_19 (Length: 332)
Name: NF13075_high_19
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 87106 - 87412
Alignment:
| Q |
11 |
cagagacacatattaaggagctcaacatagaaatatttatcttaaaaattacattcatcaattatttaaaaggcaaaatattgtattttcaatgcaaaat |
110 |
Q |
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| T |
87106 |
cagagacacatattaaggagctcaacatagaaatatttatcttaaaaattacatgcatcaattatttaaaaggcaaaatattgtattttcaatgcaaaac |
87205 |
T |
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| Q |
111 |
ttctatttttgaaaaccttaacatgtatatttaggacacaagttaacaagatctgtttatattaaaggtgcagggcagctccggccatgacagtattagc |
210 |
Q |
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| T |
87206 |
ttctatttttaaaaaccttaacatgtatatttaggacacaagttaacaagacctgtttatattaaaggtgcagggcagctccggccatgacagtattagc |
87305 |
T |
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| Q |
211 |
agctgggctgaatttgtttttgctgctgtccgggtttggagctgtttagctgctgctgtgcttttggttcgtgcctgctggccggctgcagaatttttct |
310 |
Q |
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| T |
87306 |
agctgggctgaatttgtttttgctgctgtccgggtttggagctgtttagctgctgctgtgcttttggttcgtgcctgctggccggctgcagaatttttct |
87405 |
T |
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| Q |
311 |
gctaggt |
317 |
Q |
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| T |
87406 |
gctaggt |
87412 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 7014603 - 7014534
Alignment:
| Q |
89 |
tattgtattttcaatgcaaaatttctatttttgaaaaccttaacatgtatatttaggacacaagttaaca |
158 |
Q |
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| T |
7014603 |
tattgtattttcaatgcacaacttctatttttaaaatctttaacatgtgtgttaaagacagaagttaaca |
7014534 |
T |
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