View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13075_high_2 (Length: 948)
Name: NF13075_high_2
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 753; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 18 - 938
Target Start/End: Original strand, 41274462 - 41275402
Alignment:
| Q |
18 |
attgacggggacaattatttgatttatttactacgtgaatgtcgataaagtcaatgtcgaaatggtaatcatcaaat--------------------cta |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
41274462 |
attgacggggactcttatttgatttatttactacgtgaatgttgataaagtctatgtcgaaatggtaatcatcaaatgactcttcaaattatcaaatcta |
41274561 |
T |
|
| Q |
98 |
ctgcaaaatactaattgtaaatgtgaagaaccttattttatctatctatgaactacaagttactactaatcaaaatgaacaaacgtgactaaatttaaat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41274562 |
ctgcaaaatactaattgtaaatgtgaagaaccttattttatctatctatgaactacaagttactactaatcaaaatgaacaaacgtgactaaatttaaat |
41274661 |
T |
|
| Q |
198 |
cacagaaa-tagggtcccaaatgcacaaagaaatataaatgaatacagacagcccttgctttctcaagcattcccgaagggagatagaaaaaacagagat |
296 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41274662 |
cacagaaaatagggtcccaaatggacaaagaaatataaatgaatacagacagcccttgctttctcaagcattcccgaagggagatagaaaaaacagagat |
41274761 |
T |
|
| Q |
297 |
atgccatnnnnnnnnnnnngagataacatacattttgtccctttattaattattacctttgtgcaaagttaggccaactctcttgcgtacaatttcttat |
396 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41274762 |
atgccataaaaaagaaaaagagataacatacattttgtccctttattaattattacctttgtgcaaagttaggccaactctcttgcgtacaatttcttat |
41274861 |
T |
|
| Q |
397 |
cttcttcatgtgcttttgctttgcaaataataagtcactttgaatattttactatgcaaataaataaatgtatttagttttatatagaaaaaataaatta |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41274862 |
tttcttcatgtgcttttgctttgcaaataataagtcactttgaatattttactatgcaaataaataaatttatttagttttatatagaaaaaataaatta |
41274961 |
T |
|
| Q |
497 |
tgagttactttataaaagtattcttctcagcatgagaaattaatagcctagagaaacgaatagaaagaaaaatatatataggggcagttcggtgtacaaa |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41274962 |
tgagttactttataaaagtattcttctcagcatgagaaattaatagcctagagaaacgaatagaaagaaaaatatatataggggcagttcggtgtacaaa |
41275061 |
T |
|
| Q |
597 |
actttcacatacacaggatgtggaaagaggttccaccatagatagaaaaatatatgatttaaaaattaatgtttgattagtattgtaaaacgatttatgt |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41275062 |
actttcacatacacaggatgtggaaagaggttccaccatagatagaaaaatatttgatttaaaaattaatgtttgattagtattgtaaaacgatttatgt |
41275161 |
T |
|
| Q |
697 |
ttaggacaattgtttttgcaaattgatttacaatgtgagactgaatgagtaatactttataaagtagtagcatgaatattattatgaggtgttgggttat |
796 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41275162 |
ttgggacaattgtttttgcaaattgatttacaatgtgagacggaatgagtaatactttataaagtagtagcatgaatattattatgaggtgttgggtcat |
41275261 |
T |
|
| Q |
797 |
gaggaggtcgagatttcacattgacttttgagtaacttagaattgaacacgatatcttcaccgattttnnnnnnnnttaggtgtaagaattgcttatctt |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
41275262 |
gaggaggtcgagatttcacattgacttttgagtaacttagaattgaacacgatatcttcaccga-tttaaaaaaaattaggtgtaagaattgcttatctt |
41275360 |
T |
|
| Q |
897 |
cattttttatagaattaaatttagggtgtggggatgatgtcc |
938 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41275361 |
cattttttatagaattaaatttagggtgtggggatggtgtcc |
41275402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 698
Target Start/End: Complemental strand, 33975581 - 33975544
Alignment:
| Q |
661 |
attaatgtttgattagtattgtaaaacgatttatgttt |
698 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33975581 |
attaatgtttcattagtattgtaaaacgatttatgttt |
33975544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 517
Target Start/End: Original strand, 1849487 - 1849548
Alignment:
| Q |
456 |
ataaataaatgtatttagttttatatagaaaaaataaattatgagttactttataaaagtat |
517 |
Q |
| |
|
||||| |||| || ||| |||||||||| ||| | ||||||||| ||||||||||||||||| |
|
|
| T |
1849487 |
ataaagaaatataattaattttatatagtaaagaaaaattatgaattactttataaaagtat |
1849548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University