View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_high_22 (Length: 273)
Name: NF13075_high_22
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 1734578 - 1734440
Alignment:
| Q |
119 |
ggatagtgcaattaataataactttgatgagagtgataacgaaagatctgcacgtgaagaaagttttgtagttgatgaaccgaccactgaagttgttgat |
218 |
Q |
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| T |
1734578 |
ggatagtgcaattaataataactttgatgagagtgataacgaaagatctgcacgtgaagaaagttttgtagttgatgaaccgaccactgaagttgttgat |
1734479 |
T |
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| Q |
219 |
atgagaaaacctgttgccaatgatggtgcaacaactaag |
257 |
Q |
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| T |
1734478 |
atgagaaaacctgttgccaatgatggtgcaacaactaag |
1734440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 1737663 - 1737552
Alignment:
| Q |
16 |
atgcgtgggtggtaattctattatagtttgctcaagaaccaactgtgaatgagtcttatcaataagaagttggtgatgatactgatgatgaaagcgataa |
115 |
Q |
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| T |
1737663 |
atgcgtgggtggtaattctattatagtttgctcaagaaccaactgtgaatgagtcttatcaataagaagttggtgatgatacggatgatgaaagcgataa |
1737564 |
T |
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| Q |
116 |
agaggatagtgc |
127 |
Q |
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| T |
1737563 |
agaggatagtgc |
1737552 |
T |
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