View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_high_25 (Length: 243)
Name: NF13075_high_25
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_high_25 |
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| [»] chr2 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 8719979 - 8719744
Alignment:
| Q |
8 |
tataaattttatgatggtactaagtatatgatggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtg |
107 |
Q |
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| T |
8719979 |
tataaattttatgatgttactaagtatatgatggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtg |
8719880 |
T |
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| Q |
108 |
aaattaacagatgaacaactttatgctattnnnnnnnnnnnnngcgcacataagactcaagataagaaagaaggtcttgttcaagataatggaggtcatt |
207 |
Q |
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| T |
8719879 |
aaattaacagatgaacaactttatgctattaaaaaaataaaaagcgcacataagactcaagataagaaagaaggtcttgttcaagataatggaggtcatt |
8719780 |
T |
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| Q |
208 |
ttgagatcaatggaaagctatttccaaatgaagttc |
243 |
Q |
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| T |
8719779 |
ttgagatcaatggaaagctatttccaaatgaagttc |
8719744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 8674897 - 8674789
Alignment:
| Q |
29 |
aagtatatgatggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaacagatgaacaactt |
128 |
Q |
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| T |
8674897 |
aagtataagatggtactaagtttactttattgttcaataattttgacaggttaatattttgactcatataactgaggtgaaattaacagatgagcaaatt |
8674798 |
T |
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| Q |
129 |
tatgctatt |
137 |
Q |
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| T |
8674797 |
tatgctatt |
8674789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 8592076 - 8591977
Alignment:
| Q |
38 |
atggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaacagatgaacaactttatgctatt |
137 |
Q |
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| T |
8592076 |
atggtactaaatttactttattgttcaataactttgacaggtaaacattctgactcatataactgaggtgaaattaactgaagatcaactttgtgctatt |
8591977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 8673520 - 8673451
Alignment:
| Q |
174 |
aaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctatttccaaatgaagttc |
243 |
Q |
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| T |
8673520 |
aaagagggtcttgttcaagataatggaggtccttttaagatcaaaggaaagctatttctaaatgaagttc |
8673451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 23439372 - 23439443
Alignment:
| Q |
172 |
agaaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctatttccaaatgaagttc |
243 |
Q |
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| T |
23439372 |
agaaagagggtcttgttcaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttc |
23439443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 23437893 - 23437951
Alignment:
| Q |
79 |
tcaatattttgactcatataagtgaggtgaaattaacagatgaacaactttatgctatt |
137 |
Q |
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| T |
23437893 |
tcaatattttgactcatataactgaggtgaaattaacagatgaacaactttatgctatt |
23437951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 5116802 - 5116746
Alignment:
| Q |
58 |
ttgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaa |
114 |
Q |
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| T |
5116802 |
ttgttcaataatgttcataggtgaatattttgactcatacaagtgaggtaaaattaa |
5116746 |
T |
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