View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_high_3 (Length: 661)
Name: NF13075_high_3
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 656
Target Start/End: Complemental strand, 37317463 - 37316788
Alignment:
| Q |
1 |
gctaagatgtatatatttagaatcttatcttatgtacatttgaaagcaaaaataaaatattcacatcataagctgttagactatcaatgtctaattggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317463 |
gctaagatgtatatatttagaatcttatcttatgtacatttgaaagcaaaaataaaatattcacatcataagctgttagactatcaatgtctaattggaa |
37317364 |
T |
|
| Q |
101 |
tcttctttttaccaaaattagataagttaatgtaaagaaatgtattgtacattttttatatatcttcaattccttacttccaaacttcttgttgcagtac |
200 |
Q |
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| T |
37317363 |
tcttctttttaccaaaattagataagttaatgtaaagaaatgtattgtacattttttatatatcttcaattccttacttccaaacttcttgttgcagtac |
37317264 |
T |
|
| Q |
201 |
ccctattcttctggtctgtatgaagaaaagaatatctaagcctgtcaccagcagccatttaattgaatttttatatgtataagggattgaagaannnnnn |
300 |
Q |
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| T |
37317263 |
ccctattcttctggtctgtatgaagaaaagaatatctaagcctgtcaccaccagccatttaattgaatttttatatgtataagggattgaagaagtgtgt |
37317164 |
T |
|
| Q |
301 |
nnnnnncttattgactgcattaaaccaatgtgaagccccaaactagaaggctaagaggattgtaattgcggatttaa---------------atcaaatg |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37317163 |
gtgtgtcttattgactgcattaaaccaatgtgaagccccaaactagaaggctaagaggattgtaattgcggatttaaactcacatttatcatatcaaatg |
37317064 |
T |
|
| Q |
386 |
tcctagcaatcttttaccatacggaggttctgataatatgacaccgtgttaattattttttgacaaagattattgtggtgataactttatacaataaata |
485 |
Q |
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| T |
37317063 |
tcctagcaatcttttaccatacggaggttctgataatatgacaccgtgttaattattttttgacaaagattattgtggtgataacattataaaataaata |
37316964 |
T |
|
| Q |
486 |
tttaattatataaagtgtgtactttagtgtttacaaattgaagcaataacacaaggtaaaaacttcccagctgcaatagatgatttatgtacaaagtaca |
585 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316963 |
tttaattatataaagtgtgtacattagtgtttacaaattgaagcaataacacaaggtaaaaacttcccagctgcaatagatgatttatgtacaaagtaca |
37316864 |
T |
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| Q |
586 |
aaccttttg-----ttgtatgcttctaaaagttaagaaacattactcaattaggcaatgagaaccttcatctcact |
656 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316863 |
aaccttttgttgtattgtatgcttctaaaagttaagaaacattactcaattaggcaatgagaaccttcatctcact |
37316788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 37242256 - 37242185
Alignment:
| Q |
40 |
ttgaaagcaaaaataaaatattcacatcataagctgttagactatcaatgtctaattggaatcttcttttta |
111 |
Q |
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|||||||||||| |||||||||||| ||| | |||| | ||||| ||||||||||||||||||||| |||| |
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| T |
37242256 |
ttgaaagcaaaactaaaatattcaccccattacctgtaaaactattaatgtctaattggaatcttctcttta |
37242185 |
T |
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