View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_high_4 (Length: 610)
Name: NF13075_high_4
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_high_4 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 11 - 593
Target Start/End: Complemental strand, 24494908 - 24494326
Alignment:
| Q |
11 |
atgaagttcagagagaagtgatgacaaccagagaacttcttcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494908 |
atgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttt |
24494809 |
T |
|
| Q |
111 |
tgtttaaaagacttccaagaaattgggttaccaccataaaatgtatcatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494808 |
tgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcac |
24494709 |
T |
|
| Q |
211 |
tgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaactcttttcaaggctgtaaagtg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
24494708 |
tgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcaaagaagtcttttcaaggctgtaaagtg |
24494609 |
T |
|
| Q |
311 |
tgtagatgatggatgttgcatgaattgtgcaagcttatttacagtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgctt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24494608 |
tgtagatgatggatgttgcatgaattgtgcaagcttatttacagtgtaggctatgtcaggccttgtcatggaaaaatattgtagagcccctatgacgctt |
24494509 |
T |
|
| Q |
411 |
ctgtattccgtactatctgctgcacttgcgccatcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttg |
510 |
Q |
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| T |
24494508 |
ctgtattccgtactatctgctacacttgcgccatcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttg |
24494409 |
T |
|
| Q |
511 |
tgcggtcaagtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaag |
593 |
Q |
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| T |
24494408 |
tgcggtcaagtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaag |
24494326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 143 - 593
Target Start/End: Complemental strand, 94126 - 93676
Alignment:
| Q |
143 |
accataaaatgtatcatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgc |
242 |
Q |
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| T |
94126 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcac |
94027 |
T |
|
| Q |
243 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaactcttttcaaggctgtaaagtgtgtagatgatggatgttgcatgaattgtgcaa |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
94026 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatggatattgcatgaactgtgcaa |
93927 |
T |
|
| Q |
343 |
gcttatttacagtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgcc |
442 |
Q |
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| T |
93926 |
acttatttacagtgtaggctatgtcaggccttgtcatggacaaatattgtagagcccctatgacgcttctgtattccgtactatctgcttcacttgcgcc |
93827 |
T |
|
| Q |
443 |
atcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgt |
542 |
Q |
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| T |
93826 |
atcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgt |
93727 |
T |
|
| Q |
543 |
tgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaag |
593 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93726 |
tgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaag |
93676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 86373 - 86237
Alignment:
| Q |
11 |
atgaagttcagagagaagtgatgacaaccagagaacttcttcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
86373 |
atgaagttcagagagaagtgatgacaaccagagaacttctgcggatgcgtatgctagagctctgtattcagcttcagtggatgatcttgcaacaaatttt |
86274 |
T |
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| Q |
111 |
tgtttaaaagacttccaagaaattgggttaccaccat |
147 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
86273 |
tgtttaaaagacttccaagaaattgggttaccaccat |
86237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 18557084 - 18557123
Alignment:
| Q |
11 |
atgaagttcagagagaagtgatgacaaccagagaacttct |
50 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
18557084 |
atgaagttcagagagaagtgatgacaaccagagaacttct |
18557123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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