View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_high_8 (Length: 508)
Name: NF13075_high_8
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Original strand, 51024367 - 51024842
Alignment:
| Q |
11 |
cataggcttagttttggctgcagatttgtgtatattaagtataatttataaacatgcagaaatagattggtgtcgaaaagcatttcaagttgactaaacc |
110 |
Q |
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| T |
51024367 |
cataggcttagttttggctgaagatttgtgtatattaagtataa-------acatgcagaaatagattggtgtcgaaaagcatttcaagttgactaaacc |
51024459 |
T |
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| Q |
111 |
tgtctggtgccttttggttatattatatggctctcaagttaatatgnnnnnnnacagatcatcttctagtgctgaagcagggtctcaaacatttaatcaa |
210 |
Q |
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| T |
51024460 |
tgtctggtgccttttggttatattatatggctctcaagttaatatgtttttttacagatcatcttctagtgctgaagcagggtctcaaacatttaatcaa |
51024559 |
T |
|
| Q |
211 |
ttgttgcttcctgcaccctctacatcaaatggttcggctcctccagtgaaagttgatcccaaatgggatctgctcagtggtgaagagtataactcaccaa |
310 |
Q |
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| T |
51024560 |
ttgttgcttcctgcaccctctacatcaaatggttcggctcctccagtaaaagttgatcccaaatgggatctgctcagtggtgaagagtataactcaccaa |
51024659 |
T |
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| Q |
311 |
aagcagataattcacttgctcttgttcctgtagaacaacagcctgccagtcctgtgtctcaacagaatgcccttgttccttttgatttgttttctaatgg |
410 |
Q |
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| T |
51024660 |
aagcagataattcacttgctcttgttcctgtagaacaacagcctgccagtcctgtgtctcaacagaatgcccttgttccttttgatttgttttctaatgg |
51024759 |
T |
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| Q |
411 |
aaacattgtgccaacttctgttaatacccagccactagccccccaatttcaacaacaaactatcatatctcaaggtgtatttt |
493 |
Q |
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| T |
51024760 |
aaacattgtacccacttctgttaatacccagctaatagccccccaatttcaacaacaaactatcatatctcaaggtgtatttt |
51024842 |
T |
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Back To:
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Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 172 - 444
Target Start/End: Complemental strand, 8801773 - 8801498
Alignment:
| Q |
172 |
tcttctagtgctgaagcagggtctcaaacatttaatcaattgttgcttcctgcaccctctacatcaaatggttcggctcctccagtgaaagttgatccca |
271 |
Q |
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|||||| |||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||| |||||||| ||| || | |||| |||||||| |
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| T |
8801773 |
tcttctggtgctgaagcagggtcccaaacattgaatcaattaatgcttcctgcaccagctacatccaatggttcagctgtacctgccaaagctgatccca |
8801674 |
T |
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| Q |
272 |
aatgggatctgctcagtggtgaagagtataactcaccaaaagcagataattcacttgctcttgttcct---gtagaacaacagcctgccagtcctgtgtc |
368 |
Q |
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| T |
8801673 |
agtgggacctgctcagtggtgataactatgactcaccaaaagcagatacttcacttgctcttgttcctctaggagaacaacaacctgccactcctgtatc |
8801574 |
T |
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| Q |
369 |
tcaacagaatgcccttgttccttttgatttgttttctaatggaaacattgtgccaacttctgttaatacccagcca |
444 |
Q |
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| T |
8801573 |
taatcagaatgcccttgttctttttgatatgctttctagtggagacaatgcacctacgtctgccaatacccagcca |
8801498 |
T |
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