View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13075_low_1 (Length: 1120)

Name: NF13075_low_1
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13075_low_1
NF13075_low_1
[»] chr5 (22 HSPs)
chr5 (548-828)||(1758778-1759058)
chr5 (18-298)||(1758260-1758540)
chr5 (821-1106)||(1759281-1759557)
chr5 (18-298)||(29568072-29568357)
chr5 (18-298)||(29168367-29168652)
chr5 (18-298)||(27918762-27919045)
chr5 (18-298)||(29425408-29425699)
chr5 (645-828)||(38866863-38867046)
chr5 (612-814)||(29250415-29250617)
chr5 (32-230)||(38157394-38157592)
chr5 (645-809)||(29426336-29426500)
chr5 (640-826)||(29169362-29169548)
chr5 (486-616)||(29250127-29250257)
chr5 (640-809)||(29566527-29566696)
chr5 (374-479)||(1758676-1758781)
chr5 (640-813)||(32432111-32432284)
chr5 (374-446)||(29425844-29425916)
chr5 (374-446)||(27919187-27919259)
chr5 (374-446)||(29168743-29168815)
chr5 (374-446)||(29567858-29567930)
chr5 (443-510)||(29567215-29567281)
chr5 (914-974)||(1754206-1754265)
[»] chr4 (40 HSPs)
chr4 (18-298)||(27462112-27462392)
chr4 (20-298)||(27521043-27521321)
chr4 (18-298)||(27482251-27482532)
chr4 (18-285)||(18986212-18986480)
chr4 (613-818)||(27463021-27463226)
chr4 (616-818)||(27483396-27483598)
chr4 (610-826)||(18987740-18987956)
chr4 (616-818)||(27471623-27471825)
chr4 (612-818)||(27519798-27520004)
chr4 (443-616)||(27520380-27520553)
chr4 (443-616)||(18987200-18987369)
chr4 (821-981)||(27505659-27505809)
chr4 (821-981)||(27479934-27480084)
chr4 (821-981)||(27523360-27523510)
chr4 (821-981)||(27526069-27526219)
chr4 (821-980)||(27516567-27516716)
chr4 (374-446)||(18986615-18986687)
chr4 (374-446)||(27520829-27520901)
chr4 (443-522)||(27471494-27471573)
chr4 (821-980)||(27473925-27474074)
chr4 (821-1003)||(27487016-27487188)
chr4 (830-983)||(27513731-27513874)
chr4 (821-981)||(27460511-27460661)
chr4 (821-981)||(27469493-27469643)
chr4 (374-446)||(27482668-27482740)
chr4 (853-981)||(27502092-27502210)
chr4 (821-981)||(27476720-27476870)
chr4 (374-440)||(27462594-27462660)
chr4 (910-968)||(27444764-27444822)
chr4 (910-980)||(27466933-27467003)
chr4 (832-966)||(27557533-27557657)
chr4 (910-979)||(27567367-27567436)
chr4 (821-968)||(27498448-27498585)
chr4 (1007-1065)||(27474102-27474160)
chr4 (830-968)||(27431118-27431246)
chr4 (830-967)||(27501359-27501486)
chr4 (910-981)||(27500295-27500366)
chr4 (1012-1078)||(27469688-27469754)
chr4 (910-968)||(27554421-27554479)
chr4 (910-945)||(27495648-27495683)
[»] chr3 (6 HSPs)
chr3 (18-298)||(25518596-25518877)
chr3 (645-814)||(25520054-25520223)
chr3 (374-446)||(25519019-25519091)
chr3 (910-968)||(50904762-50904820)
chr3 (910-972)||(38028732-38028794)
chr3 (910-972)||(38040047-38040109)
[»] chr7 (1 HSPs)
chr7 (676-802)||(1699948-1700074)
[»] chr8 (1 HSPs)
chr8 (910-972)||(21604720-21604782)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 548 - 828
Target Start/End: Original strand, 1758778 - 1759058
Alignment:
Q  548 gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattgatt 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1758778 gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattcatt 1758877  T
Q  648 tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggc 747  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1758878 tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatgtccatgtggc 1758977  T
Q  748 aagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct 828  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758978 aagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct 1759058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 1758260 - 1758540
Alignment:
Q  18 catgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758260 catgcacctcgccagatcaatccattccggtaaaagggctatcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 1758359  T
Q  118 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758360 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 1758459  T
Q  218 taaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt 298  Q
    |||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1758460 taaaaaagtaatctttttttgatttggaataatgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcggtt 1758540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 821 - 1106
Target Start/End: Original strand, 1759281 - 1759557
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      |||||    
T  1759281 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaatttgaatacaaccatccaat------gggtg 1759374  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatcaaaagaccaatttttgta 1020  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||    
T  1759375 gtctcaccattctttgcagagaagaagttttcttagatatcacttctcacttgaattgaatcagc---tctctgaaaatatcaaaagaccaatttttgta 1759471  T
Q  1021 caactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaacttcatatttctataattcttctctgat 1106  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1759472 gaactttagtttcttaccttcaaaagatttttacttttcttgttacttggatgtaaaacttcatatttctataattcttctctgat 1759557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 29568357 - 29568072
Alignment:
Q  18 catgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 117  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  29568357 catgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagatgtatatctgaagttattgatcc 29568258  T
Q  118 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  29568257 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcattggtatgtgttgaaacatgtgtttcttgc 29568158  T
Q  218 taaaaaagtaatcnnnnnnnga-tttggaataatgggttttgtttg----ttatttgtagaggcttaaaaggatgaaggatcggtt 298  Q
    |||||||||||||        | |||||||||||||||||||||||    || |||||||||||||||||||||||||||||||||    
T  29568157 taaaaaagtaatcttttttttattttggaataatgggttttgtttgttttttctttgtagaggcttaaaaggatgaaggatcggtt 29568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 177; E-Value: 8e-95
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 29168367 - 29168652
Alignment:
Q  18 catgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 117  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  29168367 catgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagatgtatatctgaagttattgatcc 29168466  T
Q  118 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 217  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29168467 ttctaaggttaaagaagcagttgctctttatttgaactcttctgaaagaaccacccctgaatctgattcaatggtatgtgttgaaaattgtgtttcttgc 29168566  T
Q  218 taaaaaagtaatc-----nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt 298  Q
    |||||||||||||             |||||||||  ||| ||||  ||| |||||||||||||||||||||||||||||||||||    
T  29168567 taaaaaagtaatctattttttttttaatttggaatcttggtttttcattgatatttgtagaggcttaaaaggatgaaggatcggtt 29168652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 27918762 - 27919045
Alignment:
Q  18 catgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 117  Q
    ||||||| | ||||||||||||||||||||| ||||||  ||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  27918762 catgcactttgccagatcaatccattccggttaaagggtcgtcgactgctttgccgcctctccctccgatcaggagatgtatatctgaagttattgatcc 27918861  T
Q  118 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 217  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27918862 ttctgaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtgtgtgttgaaacttgtgtttcttgc 27918961  T
Q  218 taaaaaagtaatc---nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt 298  Q
    |||||||||||||           ||||||||| |||| |||| |||| | || ||||||||||||||||||||||||||||||    
T  27918962 taaaaaagtaatctatttttttttatttggaatcatggtttttctttgattttcgtagaggcttaaaaggatgaaggatcggtt 27919045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 29425408 - 29425699
Alignment:
Q  18 catgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 117  Q
    ||||||||| |||  |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  29425408 catgcaccttgccgaatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagtagatgtatatatgaagttattgatcc 29425507  T
Q  118 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgt----------tgaaacttg 207  Q
    || | ||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||          |||||||||    
T  29425508 ttataaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaactacacctgaatctgattcattggtatgtgttggattattatgaaacttg 29425607  T
Q  208 tgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttg-ttatttgtagaggcttaaaaggatgaaggatcggtt 298  Q
    |||||||||||||||||||||||        |||||| || |||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  29425608 tgtttcttgctaaaaaagtaatcttttttttatttgggatcatgggttttggttgtttttttgtagaggcttaaaaggatgaaggatcggtt 29425699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 645 - 828
Target Start/End: Complemental strand, 38867046 - 38866863
Alignment:
Q  645 atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt 744  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||    
T  38867046 atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtccatgt 38866947  T
Q  745 ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct 828  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||  ||| |||||||||||||    
T  38866946 ggcaagggatatgaggttctaatatgtgcaaacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattcct 38866863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 612 - 814
Target Start/End: Original strand, 29250415 - 29250617
Alignment:
Q  612 tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgat 711  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  29250415 tttcagattaattgtttttatgctgaacaattcatttatgtttttgtaggatgaattgggaaatgattataaagaagctgttagtgtggagtggattgat 29250514  T
Q  712 aagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagt 811  Q
    |||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||| || | || ||||||||||    
T  29250515 aagtgtttgagccttactttcaagtgtccatgcggcaagggatatgaggttctaatatgtgctaacaattgctactacaagttggtttacaagaatcagt 29250614  T
Q  812 atg 814  Q
    |||    
T  29250615 atg 29250617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 38157394 - 38157592
Alignment:
Q  32 gatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatccttctgaggttaaag 131  Q
    ||||||||||| ||||| ||||||  |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38157394 gatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatcaggagatgtatatctgaagttattgatccttctgaggttaaag 38157493  T
Q  132 aagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgctaaaaaagtaatc 230  Q
    || ||||| || ||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  38157494 aaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaatggtatgtgttgaaacttgtttttcttgctaaaatagtaatc 38157592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 645 - 809
Target Start/End: Original strand, 29426336 - 29426500
Alignment:
Q  645 atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt 744  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||    
T  29426336 atttatgtttttgtaggatgaatcgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaaaccttactttcaagtgtccatgt 29426435  T
Q  745 ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||||||    
T  29426436 ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca 29426500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 640 - 826
Target Start/End: Original strand, 29169362 - 29169548
Alignment:
Q  640 aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc 739  Q
    |||| |||| || |||||||||||||||||| ||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||  |  |    
T  29169362 aattcatttatgattttgtaggatgaattgggaaatgattatgaagaagctgtcagtgtagaatggattgataagtgtttaagccttactttcaggtgcc 29169461  T
Q  740 catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattc 826  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||    
T  29169462 catgtggcaagggatatgagattctaatatgtgcaaacaattgttactacaagttggtctagaagaatcattatgtttaattgattc 29169548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 486 - 616
Target Start/End: Original strand, 29250127 - 29250257
Alignment:
Q  486 atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattgaagggtaaaaatgctaaattttaagacaagaacatactgaag 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||    
T  29250127 atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattaaagggtaagattgctaaattttaagacaggaacatactgaag 29250226  T
Q  586 aatgaagatgacatattcaattatagtttca 616  Q
    |||||||||||||||||||||||||||||||    
T  29250227 aatgaagatgacatattcaattatagtttca 29250257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 640 - 809
Target Start/End: Complemental strand, 29566696 - 29566527
Alignment:
Q  640 aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc 739  Q
    |||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||| | ||    
T  29566696 aattcatttatgtttttgcaggatgaattgggaaatgattatgaagaagctgttagtgtagaatggattgatgagtgtttaagccttactttcaagtgtc 29566597  T
Q  740 catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||||||    
T  29566596 catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca 29566527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 374 - 479
Target Start/End: Original strand, 1758676 - 1758781
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttttaatttacagaatct 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1758676 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttataatttacagaatct 1758775  T
Q  474 atgtaa 479  Q
    ||||||    
T  1758776 atgtaa 1758781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 640 - 813
Target Start/End: Original strand, 32432111 - 32432284
Alignment:
Q  640 aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc 739  Q
    |||| |||||||| |||||||||||  |||| | | ||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||| |  | ||    
T  32432111 aattcatttttgtgtttgtaggatggtttggcagaagattatgaagaagctgttagtgtagagtggattgaaaagtgtttaagccttatttttaggtgtc 32432210  T
Q  740 catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtat 813  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||| || | |||||||||||||||    
T  32432211 catgtggcaaggggtatgaggttctaatatgtgcaaacaattgttactacaagttggtgtagaagaatcagtat 32432284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 29425844 - 29425916
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 446  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  29425844 ctcttttgttgctgatgatgaaaaagtcatatctcaggtacatgtcttgaatattcagctgtgattgtctttt 29425916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 27919187 - 27919259
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 446  Q
    ||||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  27919187 ctcttttattactgaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcgactgtgattgactttt 27919259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 29168743 - 29168815
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 446  Q
    |||| ||||||||||||||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  29168743 ctctcttgttgctgaagatgaaaatgtcatatctcaggtatatgtcttgaatcttcgactgtgattgtctttt 29168815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 29567930 - 29567858
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 446  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||| ||||||||    
T  29567930 ctctcttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgactgtctttt 29567858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 443 - 510
Target Start/End: Complemental strand, 29567281 - 29567215
Alignment:
Q  443 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgt 510  Q
    |||||||||| ||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  29567281 tttttccttttgttttta-tttaccggatctaggtaagaataaatactcttcctttcaagaattttgt 29567215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 914 - 974
Target Start/End: Complemental strand, 1754265 - 1754206
Alignment:
Q  914 atgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttga 974  Q
    |||||||||||||| |||| ||| |||||| || ||||||||||||||||||||| |||||    
T  1754265 atgggtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgcttga 1754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 27462112 - 27462392
Alignment:
Q  18 catgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 117  Q
    |||||||||  || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  27462112 catgcacctttccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagatgtatatctgaagttattgatcc 27462211  T
Q  118 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 217  Q
    | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27462212 tactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 27462311  T
Q  218 taaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt 298  Q
    ||||||||||| |       ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27462312 taaaaaagtaaactttttttgatttggaatattgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcggtt 27462392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 27521321 - 27521043
Alignment:
Q  20 tgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcctt 119  Q
    ||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  27521321 tgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctcagcctccgatcagcagatgtatatctgaagttattgatcctt 27521222  T
Q  120 ctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgcta 219  Q
     |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27521221 ttgaggttaaagaagcagtagctcgttatttgaactctgctaaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgata 27521122  T
Q  220 aaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt 298  Q
    |||||||| ||       ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  27521121 aaaaagtactctttttttgatttggaataatgggttttgtttgtttttcgtagaggcttaaaaggatgaaggatcggtt 27521043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 27482251 - 27482532
Alignment:
Q  18 catgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 117  Q
    |||||||||  || ||||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  27482251 catgcacctttccggatcaatccatgccagtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagatgtatatctgaagttatcgatcc 27482350  T
Q  118 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 217  Q
    | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27482351 tactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 27482450  T
Q  218 taaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt 298  Q
    |||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27482451 taaaaaagtaatcttttttttaatttggaataatgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcggtt 27482532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 18986212 - 18986480
Alignment:
Q  18 catgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 117  Q
    ||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18986212 catgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 18986311  T
Q  118 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 217  Q
     ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18986312 gtctgatgttaaagaagcagttgatcgttatttgaactctgctgaaaaaaccacccttgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 18986411  T
Q  218 taaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaagga 285  Q
    |||||||||||||        || |||||||||||||||||||||||| |||||| |||||||||||||    
T  18986412 taaaaaagtaatcttttttttgacttggaataatgggttttgtttgttttttgtataggcttaaaagga 18986480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 613 - 818
Target Start/End: Original strand, 27463021 - 27463226
Alignment:
Q  613 ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgata 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27463021 ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgata 27463120  T
Q  713 agtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagta 812  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  27463121 agtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagta 27463220  T
Q  813 tgctta 818  Q
    ||||||    
T  27463221 tgctta 27463226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 616 - 818
Target Start/End: Original strand, 27483396 - 27483598
Alignment:
Q  616 agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagt 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27483396 agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagt 27483495  T
Q  716 gtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgc 815  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  27483496 gtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgc 27483595  T
Q  816 tta 818  Q
    |||    
T  27483596 tta 27483598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 610 - 826
Target Start/End: Original strand, 18987740 - 18987956
Alignment:
Q  610 agtttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttg 709  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||    
T  18987740 agtttcagattaatagtttttatgctgaacaattgttttttgtttttgtaggatcaattgggaaatgattatgaagaagctgttagtgtggagtggattg 18987839  T
Q  710 ataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca 809  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  18987840 ataagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatca 18987939  T
Q  810 gtatgcttaattgattc 826  Q
    ||||||||||| |||||    
T  18987940 gtatgcttaatagattc 18987956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 179; E-Value: 5e-96
Query Start/End: Original strand, 616 - 818
Target Start/End: Original strand, 27471623 - 27471825
Alignment:
Q  616 agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagt 715  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27471623 agattaatagtttttatgctgaacaattgatttttatttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagt 27471722  T
Q  716 gtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgc 815  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  27471723 gtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgc 27471822  T
Q  816 tta 818  Q
    |||    
T  27471823 tta 27471825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 179; E-Value: 5e-96
Query Start/End: Original strand, 612 - 818
Target Start/End: Complemental strand, 27520004 - 27519798
Alignment:
Q  612 tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgat 711  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27520004 tttcagattaatagtttttatgctgaacagttcatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgat 27519905  T
Q  712 aagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagt 811  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  27519904 aagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagt 27519805  T
Q  812 atgctta 818  Q
    |||||||    
T  27519804 atgctta 27519798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 443 - 616
Target Start/End: Complemental strand, 27520553 - 27520380
Alignment:
Q  443 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt 542  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |  ||||     
T  27520553 tttttcctttggtttttaatttaccgaatctaggtaagaataaacactcttcttttcaagaattttgtgggcaatatgttagagttagaggttttatatc 27520454  T
Q  543 gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca 616  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27520453 gaagggtaaaaatgctaaattttaagacaggaacatactgaagaatgaagatgacatattcaattatagtttca 27520380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 443 - 616
Target Start/End: Original strand, 18987200 - 18987369
Alignment:
Q  443 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt 542  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  18987200 tttttcctttggtttttaatttaccgaatctaggtaagaataaatactcttcctttcaagaattttgtgggaagtatgttagagttagaggctgcatatt 18987299  T
Q  543 gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca 616  Q
    ||||||||||||||||||||||||||||||||||||||||||    |||||||| |||||||||||||||||||    
T  18987300 gaagggtaaaaatgctaaattttaagacaagaacatactgaa----gaagatgatatattcaattatagtttca 18987369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 821 - 981
Target Start/End: Complemental strand, 27505809 - 27505659
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||    |||||||||||||||||||||||||  ||||||||||      |||||    
T  27505809 tgattcctgtatcatacttgaaccaaacctcattccaagaattgttga----accaagctgaggaacaatttgaatatgaccatccaat------gggtg 27505720  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 981  Q
    ||||||| |||| ||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  27505719 gtctcactattccttgcagagaagagattttcttagatatcatttctcacttgaattgaat 27505659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 821 - 981
Target Start/End: Original strand, 27479934 - 27480084
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||||||||||||||| || |||||||||||||||||| | |||||||    |||||||||||||||||||||||||  | ||||||      |||||||    
T  27479934 tgattcctgtatcatacttgaaccaaacatcattccaaaagttgttga----accaagctgaggaacaatttgaatatgatcatcca------atgggtg 27480023  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 981  Q
    |||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  27480024 gtctcaccattccttgcagagaagacattttcttagatattaattctcacttgaattgaat 27480084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 821 - 981
Target Start/End: Complemental strand, 27523510 - 27523360
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||| ||    || |||||||||||||||||  ||||||||||      |||||    
T  27523510 tgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcgaa----gccgaggaacaatttgaatatgaccatccaat------gggtg 27523421  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 981  Q
    |||| || |||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  27523420 gtctaactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaat 27523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 821 - 981
Target Start/End: Complemental strand, 27526219 - 27526069
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||||||||||||||| || |||||||| ||||||||||||||||||||||||    ||||||||||||||||||||  | |||||||       |||||    
T  27526219 tgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaa----gctgaggaacaatttgaatatgatcatccaac------gggtg 27526130  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 981  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||||||  |||||||||||    
T  27526129 gtctcactattccttgcagagaagacgttttcttagagatcacttctcgtttgaattgaat 27526069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 821 - 980
Target Start/End: Complemental strand, 27516716 - 27516567
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||| ||| |||||||||| || |||| ||||||||||||||||||||    |||||||||||||||||||||||||  ||||||||||      ||| |    
T  27516716 tgatccctatatcatatttgaagcaaaaatcattccaagaattgttga----accaagctgaggaacaatttgaatatgaccatccaat------ggggg 27516627  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 980  Q
    ||||||| |||| ||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  27516626 gtctcactattccttgcaaagaagaagttttcttagatatcacttctaacttgaattgaa 27516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 18986615 - 18986687
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 446  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18986615 ctcttttgttgctaaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcaactgtgattgtctttt 18986687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 27520901 - 27520829
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 446  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27520901 ctcttttgttgctgaagatgaaaaagtcatatcgcaggtacatgtcttgaatcttcaactgtgattgtctttt 27520829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 443 - 522
Target Start/End: Original strand, 27471494 - 27471573
Alignment:
Q  443 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgtt 522  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  27471494 tttttcgtttggtttttaatttactgaatctaggtaagaataaatactcttcctttcatgaattttgtgggcaatatgtt 27471573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 821 - 980
Target Start/End: Original strand, 27473925 - 27474074
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||| ||| |||||||||| || |||| |||||||||||||||| ||||||||   || ||||||||||||||||||  | ||||||      |||||||    
T  27473925 tgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtg 27474014  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 980  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||    
T  27474015 gtctcaccattccttgcggagaagacgttttcttagacatcacttctcgcttgaattgaa 27474074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 821 - 1003
Target Start/End: Original strand, 27487016 - 27487188
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||| ||| ||||||| ||||||||| |||| || |||||||||||||    |||||||||| ||||||||||||||  | ||||||      |||||||    
T  27487016 tgatccctttatcatacttaaaccaaccatcgtttcaagaattgttga----accaagctgaagaacaatttgaatatgatcatcca------atgggtg 27487105  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatca 1003  Q
    |||| || |||| ||||| ||||||| ||||||||||||| |||||||||||||||||||| |  || ||| |||||||||||    
T  27487106 gtcttactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaattattagttctttgaagatatca 27487188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 830 - 983
Target Start/End: Complemental strand, 27513874 - 27513731
Alignment:
Q  830 tatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcacca 929  Q
    ||||||| || |||||||| || ||||||||||||||||    |||||||||| ||||||| ||||||  | ||||||||      |||||||||||| |    
T  27513874 tatcatacttgaaccaaacctcgttccaagaattgttga----accaagctgaagaacaatatgaatatgatcatccaat------gggtggtctcacta 27513785  T
Q  930 ttctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatca 983  Q
    ||| |||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  27513784 ttccttgcagagaagaagtattcttagatatcacttctcgcttgaattgaatca 27513731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 821 - 981
Target Start/End: Original strand, 27460511 - 27460661
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||| ||| |||||||||| || |||| |||||||||||||||| ||||||||   || ||||||||||||||||||  | ||||||      |||||||    
T  27460511 tgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtg 27460600  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 981  Q
    |||||||||||| ||||||||||||| ||||||| |||||||| |||||||| | ||||||    
T  27460601 gtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaat 27460661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 821 - 981
Target Start/End: Original strand, 27469493 - 27469643
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||| ||| |||||||||| || ||||||||||| |||||| |||||||||||    ||||| ||||||||||||||  | ||||||      |||||||    
T  27469493 tgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaa----gctgaagaacaatttgaatatgaacatcca------atgggtg 27469582  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 981  Q
    |||| || |||| ||||||||||||  |||||||||||||||| |||||||| ||||||||    
T  27469583 gtctaactattccttgcagagaagaaattttcttagatatcacctctcacttcaattgaat 27469643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 27482668 - 27482740
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 446  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||| ||||    
T  27482668 ctcttttgttgctgaagatgaaaaagtcatatctcaggtacatatcttgaatctttaacggtgattgtgtttt 27482740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 853 - 981
Target Start/End: Complemental strand, 27502210 - 27502092
Alignment:
Q  853 ttccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcagagaagacgttttc 952  Q
    ||||||||||||||||    |||||||||||||||||||||||||  | ||||||||      ||||||||| || |||| ||||||||||||| |||||    
T  27502210 ttccaagaattgttga----accaagctgaggaacaatttgaatatgatcatccaat------gggtggtctaactattccttgcagagaagacattttc 27502121  T
Q  953 ttagatatcacttctcacttgaattgaat 981  Q
    ||||||||||| |||||||| ||||||||    
T  27502120 ttagatatcacctctcacttaaattgaat 27502092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 821 - 981
Target Start/End: Original strand, 27476720 - 27476870
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||||||||||||||| || |||||||| |||||||||||| || ||||||||   || ||||||||||||||||||  | ||||||      |||||||    
T  27476720 tgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtg 27476809  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 981  Q
    |||| || |||| ||||||||||||| ||||||| ||||| || |||||||| ||||||||    
T  27476810 gtctaactattccttgcagagaagacattttcttggatattacctctcacttaaattgaat 27476870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 27462594 - 27462660
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattg 440  Q
    |||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  27462594 ctcttttgtttctgaagatgaaaaagtcatatctcaggtacatatcttgaatattcaactgtgattg 27462660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 910 - 968
Target Start/End: Complemental strand, 27444822 - 27444764
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 968  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  27444822 tccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 27444764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 910 - 980
Target Start/End: Original strand, 27466933 - 27467003
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 980  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||  |||||||||||    
T  27466933 tccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaattgaa 27467003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 832 - 966
Target Start/End: Original strand, 27557533 - 27557657
Alignment:
Q  832 tcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccatt 931  Q
    ||||| ||||||||| ||||||| ||||||||| |||    | |||||||||||||||||||||||    ||||||      |||||||||||||| |||    
T  27557533 tcatacttaaaccaaccatcatttcaagaattgctga----atcaagctgaggaacaatttgaatatgttcatcca------atgggtggtctcactatt 27557622  T
Q  932 ctttgcagagaagacgttttcttagatatcacttc 966  Q
    |  ||||||||||| ||||||||||||||||||||    
T  27557623 ccatgcagagaagatgttttcttagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 910 - 979
Target Start/End: Original strand, 27567367 - 27567436
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattga 979  Q
    |||||||||||||||||| |||| |||||| ||||| | |||||||||  ||||||||||||||||||||    
T  27567367 tccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattga 27567436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 821 - 968
Target Start/End: Original strand, 27498448 - 27498585
Alignment:
Q  821 tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtg 920  Q
    |||| ||| ||||||| || |||||| |||| |||||||| |||||||    ||||||| ||||||||||| |||||  | ||||||      |||||||    
T  27498448 tgatccctatatcatacttgaaccaaccatcgttccaagacttgttga----accaagccgaggaacaattcgaatatgatcatcca------atgggtg 27498537  T
Q  921 gtctcaccattctttgcagagaagacgttttcttagatatcacttctc 968  Q
    ||||||| |||| |||| |||||||| | |||||||||||||||||||    
T  27498538 gtctcactattccttgcggagaagacatgttcttagatatcacttctc 27498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1007 - 1065
Target Start/End: Original strand, 27474102 - 27474160
Alignment:
Q  1007 gaccaatttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgtta 1065  Q
    ||||||||||||||  |||||||||||| |||||||||||||||| |||||| ||||||    
T  27474102 gaccaatttttgtagcactttagtttctaaccttcaaaagattttcacttttgttgtta 27474160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 830 - 968
Target Start/End: Complemental strand, 27431246 - 27431118
Alignment:
Q  830 tatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcacca 929  Q
    ||||||| || |||||| | ||||| |||||||||||||    | ||||| ||||||||||||| |||  |||||||||  ||    ||||||||||| |    
T  27431246 tatcatacttgaaccaaccgtcatttcaagaattgttga----atcaagccgaggaacaatttggatatgaccatccaa--cc----ggtggtctcacaa 27431157  T
Q  930 ttctttgcagagaagacgttttcttagatatcacttctc 968  Q
    ||| |||||||||||||||||||||| |||| |||||||    
T  27431156 ttccttgcagagaagacgttttcttaaatattacttctc 27431118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 830 - 967
Target Start/End: Original strand, 27501359 - 27501486
Alignment:
Q  830 tatcatatttaaaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcacca 929  Q
    ||||||| ||||||||| |||  || ||||| |||||||    ||||||| |||||||||||||||||| | |||||||       |||||||||||| |    
T  27501359 tatcatacttaaaccaaccattgtttcaagacttgttga----accaagccgaggaacaatttgaatacgatcatccaac------gggtggtctcacta 27501448  T
Q  930 ttctttgcagagaagacgttttcttagatatcacttct 967  Q
    ||| ||| ||||||||| | ||||||||||||||||||    
T  27501449 ttccttgtagagaagacatgttcttagatatcacttct 27501486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 910 - 981
Target Start/End: Complemental strand, 27500366 - 27500295
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 981  Q
    ||||||||||||  |||| |||| ||||||||||||| ||||||||||  ||||||||  ||||||||||||    
T  27500366 tccaatgggtggcatcactattccttgcagagaagaccttttcttagaattcacttcttgcttgaattgaat 27500295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1012 - 1078
Target Start/End: Original strand, 27469688 - 27469754
Alignment:
Q  1012 atttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaa 1078  Q
    |||||||||  ||||||||||| ||||||||||||||||| |||||| |||| | ||| ||||||||    
T  27469688 atttttgtagcactttagtttcataccttcaaaagattttcacttttgttgtaatttggatgtaaaa 27469754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 910 - 968
Target Start/End: Original strand, 27554421 - 27554479
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 968  Q
    ||||| |||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  27554421 tccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctc 27554479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 910 - 945
Target Start/End: Original strand, 27495648 - 27495683
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaaga 945  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27495648 tccaatgggtggtctcaccattccttgcagagaaga 27495683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-99; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 25518596 - 25518877
Alignment:
Q  18 catgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatctgaagttattgatcc 117  Q
    ||||||||| ||| |||||| | || ||||| ||||||  ||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  25518596 catgcaccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgccgcctctgcctccgatcaggagatgtatatctgaagttattgatcc 25518695  T
Q  118 ttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 217  Q
    ||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518696 tttggaggttaaagaagcagttgcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaaacttgtgtttcttgc 25518795  T
Q  218 taaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt 298  Q
    |||||||||||||         ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25518796 taaaaaagtaatctttttttatatttggaatcatgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcggtt 25518877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 9e-67
Query Start/End: Original strand, 645 - 814
Target Start/End: Original strand, 25520054 - 25520223
Alignment:
Q  645 atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt 744  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||    
T  25520054 atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtagagtgggttgataagtgtttaagccttactttcaagtgtccatgt 25520153  T
Q  745 ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatg 814  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||    
T  25520154 agcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtagaagaatcactatg 25520223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 25519019 - 25519091
Alignment:
Q  374 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 446  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||    
T  25519019 ctcttttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgattgtctttt 25519091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 910 - 968
Target Start/End: Complemental strand, 50904820 - 50904762
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 968  Q
    |||||||||||| |||||||||| |||||||||||| ||||| ||  ||||||||||||    
T  50904820 tccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctc 50904762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 910 - 972
Target Start/End: Complemental strand, 38028794 - 38028732
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 972  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  38028794 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38028732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 910 - 972
Target Start/End: Complemental strand, 38040109 - 38040047
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 972  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  38040109 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38040047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 676 - 802
Target Start/End: Complemental strand, 1700074 - 1699948
Alignment:
Q  676 gattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaa 775  Q
    |||| |||||||||||| ||||| ||||||| ||| || ||  |||||||||||||||| | ||||||||||||||| ||||||||||| || |  || |    
T  1700074 gattttgaagaagctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagcca 1699975  T
Q  776 acaattgttactacaagctgatctaga 802  Q
    |||||||||| |||||| || ||||||    
T  1699974 acaattgttattacaagttggtctaga 1699948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 910 - 972
Target Start/End: Complemental strand, 21604782 - 21604720
Alignment:
Q  910 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 972  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  21604782 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 21604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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