View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13075_low_10 (Length: 507)

Name: NF13075_low_10
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13075_low_10
NF13075_low_10
[»] chr4 (1 HSPs)
chr4 (348-386)||(54111668-54111706)
[»] chr2 (2 HSPs)
chr2 (211-245)||(26435877-26435911)
chr2 (274-302)||(19239837-19239865)
[»] chr7 (1 HSPs)
chr7 (211-248)||(18740852-18740889)
[»] chr6 (1 HSPs)
chr6 (211-248)||(4442017-4442054)
[»] chr5 (1 HSPs)
chr5 (467-500)||(38722184-38722217)
[»] chr3 (1 HSPs)
chr3 (274-314)||(12919508-12919548)


Alignment Details
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 54111668 - 54111706
Alignment:
Q  348 ccgagtgaaggatatgcgatgttagagcagccgagtgag 386  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  54111668 ccgagtgaaggataagcgatgctagagcagccgagtgag 54111706  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 26435877 - 26435911
Alignment:
Q  211 aactcaagttcgacttgtttaaagttcacgaacaa 245  Q
    ||||| |||||||||||||||||||||||||||||    
T  26435877 aactcgagttcgacttgtttaaagttcacgaacaa 26435911  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 19239837 - 19239865
Alignment:
Q  274 acctaaaaataattattttgttagtcgaa 302  Q
    |||||||||||||||||||||||||||||    
T  19239837 acctaaaaataattattttgttagtcgaa 19239865  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 18740889 - 18740852
Alignment:
Q  211 aactcaagttcgacttgtttaaagttcacgaacaactc 248  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  18740889 aactcgagttcgactcgtttaaagttcacgaacaactc 18740852  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 4442054 - 4442017
Alignment:
Q  211 aactcaagttcgacttgtttaaagttcacgaacaactc 248  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  4442054 aactcaagttcgactcgtttaaagtgcacgaacaactc 4442017  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 500
Target Start/End: Original strand, 38722184 - 38722217
Alignment:
Q  467 atggacaatgacgcattatccacgatctctgctc 500  Q
    |||||||||||| |||||||||||||||||||||    
T  38722184 atggacaatgacccattatccacgatctctgctc 38722217  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 12919548 - 12919508
Alignment:
Q  274 acctaaaaataattattttgttagtcgaattcagcaaatag 314  Q
    |||||||||||||||| ||||||| ||||||| ||||||||    
T  12919548 acctaaaaataattatcttgttagccgaattcggcaaatag 12919508  T

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