View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_low_11 (Length: 499)
Name: NF13075_low_11
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 9496895 - 9497376
Alignment:
| Q |
18 |
cattgtgggtgtttaattatacagccggatgttaccttacctttgcaacctcccgagttacggagctgttctgcaacaagtgcatctttatcttccatgc |
117 |
Q |
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| T |
9496895 |
cattgtgggtgtttaattatacagccggatgttaccttacctctgcaacctcccgagttacggagctgttctgcaacaagtgcatctttatcttccatgc |
9496994 |
T |
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| Q |
118 |
acggaatgctccatgatgagattgactctttctgtaaacaggtataggtatagagtatattttgtaggtgatgttactaacacacacttgcacttacagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9496995 |
acggaatgctccatgatgagattgactctttctgtaaacaggtataggtatagagtatattttgtgggtgatgttactaacacacacttgcacttacagt |
9497094 |
T |
|
| Q |
218 |
tgcatgcctctcgcatagtcttttgcaagccagttgaaaaccctctgttccattgtaacttattcctgaacgatcccagctttggacattcgttaatatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9497095 |
tgcatgcctctcgcatagtcttttgcaagccagttgaaaaccctctgttcccttgtaacttattcctgaacgatcccagctttggacattcgttaatatc |
9497194 |
T |
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| Q |
318 |
tttatccttgtttgaagttacttctattagaatttttattgtacatgcagaggctttgtctttcttaatattgtcacctgaaaacgaagcattctaatat |
417 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9497195 |
tttatccttgtttgaagttactcctattagaatttttattgaacatgcagaggctttgtctttcttaatattgtcacctgaaaacgaagcattctaatat |
9497294 |
T |
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| Q |
418 |
tacttataattattatggaatccaaggttgcggcagaaaacctggcaaggaagccttacattaattgggctgtcaagagagt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9497295 |
tacttataattattatggaatccaaggttgcggcagaaaacctggcaaggaagccttacattaattgggctgtcaagagagt |
9497376 |
T |
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