View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_low_13 (Length: 428)
Name: NF13075_low_13
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 32 - 329
Target Start/End: Original strand, 8085600 - 8085899
Alignment:
| Q |
32 |
tcatacctcttcttatcatagcaaacatgaaatgataatggtaagagtaagtatgagaagaaaagcatggcctaaaacaaacaaacaaaggaa-----tg |
126 |
Q |
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| T |
8085600 |
tcatacctcttcttatcatagcaaacatgaaatgataatggtaagagtaagtacgagaagaaaagcatggcctaaaacaaacaaacaaaggaaaggaatg |
8085699 |
T |
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| Q |
127 |
ggtccatagtaggaagaaggcggcaccagaatttcgtcacaccattttcacgnnnnnnngtttcatttacttagtccaagtcgtcgtcgtcgtttccttt |
226 |
Q |
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| T |
8085700 |
ggtccatagtaggaagaaggcggcaccagaatttcatcacaccattttcacgtttttttgtttcatttacttagtccaagtcg---tcgtcgtttccttt |
8085796 |
T |
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| Q |
227 |
aatttacattgtcgttttggtagtctagtcaattaacacaacgtcgtcgtgcttcttgccacgaaacttctatctatacccttcaattctatttgcgcgt |
326 |
Q |
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| T |
8085797 |
aatttacattgtcgttttggtagtctagtcaattaacacaacttcgtcgtgcttcttgccacgaaacttctatctatacccttcaattccatttgcgcgt |
8085896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 50 - 329
Target Start/End: Original strand, 8076449 - 8076726
Alignment:
| Q |
50 |
tagcaaacatgaaatgataatggtaagagtaagtatgagaagaaaagcatggcctaaaacaaacaaac-aaaggaatgggtccatagtaggaagaaggcg |
148 |
Q |
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| T |
8076449 |
tagcaaatatgaaatgataatggtaagagtaagtatgagaagaaaagcatggcctaaaacaaacaaaggaaaggaatgggtccatagtaggaagaaggcg |
8076548 |
T |
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| Q |
149 |
gcaccagaatttcgtcacaccattttcacgnnnnnnngtttcatttacttagtccaagtcgtcgtcgtcgtttcctttaatttacattgtcgttttggta |
248 |
Q |
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| T |
8076549 |
gcaccagaatttcatcacaccattttcacgtttttttgtttcatttacttagtccaagtcg---tcgtcgtttcctttaatttacattgtcgttttggta |
8076645 |
T |
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| Q |
249 |
gtctagtcaattaacacaacgtcgtcgtgcttcttgccacgaaacttctatctatacccttcaattctatttgcgcgtctc |
329 |
Q |
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| T |
8076646 |
gtctagtcaattaacacaacttcgtcgtgcttcttgccacaaaacttctatctatacccttcaattccatttgcgcatctc |
8076726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 8085546 - 8085577
Alignment:
| Q |
1 |
atcaaagtaacctcctcttcttatgtaatgtt |
32 |
Q |
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| T |
8085546 |
atcaaagtaacctcctcttcttatgtaatgtt |
8085577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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