View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_low_14 (Length: 410)
Name: NF13075_low_14
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_low_14 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 36 - 410
Target Start/End: Original strand, 38522409 - 38522782
Alignment:
| Q |
36 |
ttcaagttagcttggcaaaccagttcaattccatttttcttagcttcggtccttaaaaattctgactcctccagaggaacatcggggactacaagccctg |
135 |
Q |
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| T |
38522409 |
ttcaagttagcttggcaaaccagttcaattccatttttcttagcttcggtccttaaaaattctgactcctccagaggaacatcggggactacaagccctg |
38522508 |
T |
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| Q |
136 |
catacatatgagaaacaaaataatatcatcaccagtaatgaaggcacaatttgctactagaaattcggtatatataaacaaatttagtgaccaatatata |
235 |
Q |
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| T |
38522509 |
catacatatgagaaacaaaataatatcatcaccagtaatgaag-cacaacttgctactagaaattcggtatatataaacaaatttagtgaccaatatata |
38522607 |
T |
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| Q |
236 |
tttttggtctctgtagcatccaattaaacggcttatttttcaaaccggtctctaaattagtcgataaacatacaacttttatgaaaattgactaaaccac |
335 |
Q |
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| T |
38522608 |
tttttggtctctgtagcatccaattaaacggcttatttttcaaaccggtctctaaattagtcgataaacatactacttttatgaaaattgactaaaccac |
38522707 |
T |
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| Q |
336 |
tagtcgttaatgttggtgactgatttgtgaaaccattacttaagttgagtctcaccatgaacaccggtgtctctt |
410 |
Q |
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| T |
38522708 |
tagtcgttaatgttggtgactgatttgtgaaaccattacttaagttgagtctcaccatgaacaccggtgtctctt |
38522782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 41389084 - 41388995
Alignment:
| Q |
54 |
accagttcaattccatttttcttagcttcggtccttaaaaattctgactcctccagaggaacatcggggactacaagccctgcatacata |
143 |
Q |
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| T |
41389084 |
accagttcaattccatgcttcttagcttcttcccttaaagttttcgtctcttccagaggaacatcggggactacaagccctgcatacata |
41388995 |
T |
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