View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13075_low_15 (Length: 403)

Name: NF13075_low_15
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13075_low_15
NF13075_low_15
[»] chr3 (30 HSPs)
chr3 (15-403)||(6092988-6093364)
chr3 (184-372)||(44186859-44187041)
chr3 (184-399)||(30766330-30766547)
chr3 (285-403)||(188594-188713)
chr3 (271-396)||(23937290-23937418)
chr3 (285-399)||(37611459-37611574)
chr3 (183-403)||(22759056-22759263)
chr3 (248-327)||(44072773-44072852)
chr3 (256-327)||(918794-918865)
chr3 (210-281)||(35437198-35437269)
chr3 (183-281)||(26035813-26035911)
chr3 (184-233)||(188727-188777)
chr3 (211-281)||(36164857-36164927)
chr3 (182-265)||(5240947-5241031)
chr3 (180-233)||(15315269-15315324)
chr3 (184-233)||(39576525-39576575)
chr3 (214-280)||(54792723-54792789)
chr3 (182-233)||(8396757-8396809)
chr3 (182-281)||(12157707-12157807)
chr3 (186-233)||(16496368-16496416)
chr3 (182-224)||(22477906-22477949)
chr3 (183-224)||(4137399-4137441)
chr3 (183-224)||(18688674-18688716)
chr3 (183-224)||(35861002-35861044)
chr3 (184-233)||(52843176-52843226)
chr3 (184-224)||(19360735-19360776)
chr3 (347-403)||(11383262-11383318)
chr3 (347-403)||(16341805-16341861)
chr3 (181-224)||(50742296-50742340)
chr3 (347-403)||(50771295-50771351)
[»] chr2 (22 HSPs)
chr2 (183-372)||(32725990-32726180)
chr2 (299-403)||(7364653-7364757)
chr2 (182-403)||(1691425-1691637)
chr2 (215-315)||(24278962-24279062)
chr2 (243-327)||(35357671-35357755)
chr2 (249-327)||(3711054-3711132)
chr2 (249-327)||(11866284-11866362)
chr2 (182-233)||(7364771-7364823)
chr2 (182-252)||(30922096-30922167)
chr2 (183-281)||(17026060-17026158)
chr2 (184-280)||(25124044-25124141)
chr2 (351-399)||(25282349-25282397)
chr2 (183-233)||(4289027-4289078)
chr2 (184-281)||(10820973-10821070)
chr2 (183-224)||(16723661-16723703)
chr2 (211-281)||(17092245-17092315)
chr2 (184-224)||(9916707-9916748)
chr2 (211-280)||(14753577-14753645)
chr2 (180-224)||(28609953-28609998)
chr2 (347-403)||(17037455-17037511)
chr2 (183-233)||(22374080-22374132)
chr2 (347-403)||(26827686-26827742)
[»] chr8 (28 HSPs)
chr8 (183-403)||(12660957-12661179)
chr8 (183-290)||(27272620-27272728)
chr8 (285-403)||(11696967-11697086)
chr8 (249-403)||(4634853-4635004)
chr8 (182-281)||(12249910-12250010)
chr8 (182-281)||(23626054-23626154)
chr8 (182-281)||(39445197-39445297)
chr8 (182-280)||(41907954-41908053)
chr8 (182-327)||(44213034-44213180)
chr8 (183-281)||(2961008-2961105)
chr8 (249-327)||(20662985-20663063)
chr8 (249-327)||(30548348-30548426)
chr8 (184-233)||(11697101-11697151)
chr8 (182-262)||(32569575-32569656)
chr8 (182-281)||(39204807-39204908)
chr8 (183-233)||(18375557-18375608)
chr8 (182-224)||(24055841-24055884)
chr8 (183-233)||(41158635-41158686)
chr8 (180-265)||(8307504-8307590)
chr8 (183-224)||(36778480-36778522)
chr8 (184-224)||(40586443-40586484)
chr8 (183-222)||(7391324-7391364)
chr8 (181-224)||(8160417-8160461)
chr8 (181-224)||(8763013-8763057)
chr8 (211-279)||(21543180-21543247)
chr8 (181-224)||(27273878-27273922)
chr8 (347-403)||(38993578-38993634)
chr8 (347-403)||(44599597-44599653)
[»] chr5 (24 HSPs)
chr5 (183-403)||(2366839-2367061)
chr5 (285-403)||(22602699-22602818)
chr5 (183-281)||(9702652-9702751)
chr5 (186-300)||(19365869-19365984)
chr5 (285-399)||(36366189-36366304)
chr5 (183-281)||(9809820-9809918)
chr5 (184-281)||(12702061-12702158)
chr5 (182-290)||(32977100-32977209)
chr5 (183-281)||(7863528-7863624)
chr5 (183-305)||(18037229-18037353)
chr5 (183-403)||(38041490-38041701)
chr5 (182-233)||(36366123-36366175)
chr5 (199-281)||(12763092-12763174)
chr5 (183-233)||(22602634-22602685)
chr5 (249-327)||(37464476-37464554)
chr5 (184-233)||(42819330-42819380)
chr5 (183-233)||(8350241-8350292)
chr5 (183-233)||(34719449-34719500)
chr5 (184-233)||(25695539-25695589)
chr5 (184-224)||(3086433-3086474)
chr5 (181-224)||(752053-752097)
chr5 (182-233)||(13596910-13596962)
chr5 (347-403)||(34374426-34374482)
chr5 (347-403)||(35539965-35540021)
[»] chr6 (26 HSPs)
chr6 (183-403)||(2624721-2624943)
chr6 (186-401)||(22975720-22975937)
chr6 (186-401)||(23812464-23812681)
chr6 (183-281)||(1932283-1932382)
chr6 (285-403)||(11470837-11470955)
chr6 (183-403)||(33300486-33300710)
chr6 (299-403)||(18389232-18389336)
chr6 (182-281)||(33318995-33319092)
chr6 (182-281)||(4425851-4425951)
chr6 (249-327)||(250020-250098)
chr6 (249-327)||(12579844-12579922)
chr6 (14-91)||(15391894-15391971)
chr6 (184-327)||(33979081-33979226)
chr6 (285-359)||(11272664-11272739)
chr6 (182-233)||(18389166-18389218)
chr6 (237-305)||(3052060-3052128)
chr6 (182-273)||(5753125-5753213)
chr6 (196-281)||(8615029-8615112)
chr6 (183-233)||(11272753-11272804)
chr6 (182-233)||(24447786-24447838)
chr6 (182-224)||(6966235-6966278)
chr6 (183-224)||(25540849-25540891)
chr6 (184-224)||(4110061-4110102)
chr6 (347-403)||(30044343-30044399)
chr6 (182-233)||(33319564-33319616)
chr6 (182-233)||(35160114-35160166)
[»] chr4 (37 HSPs)
chr4 (184-403)||(56541585-56541807)
chr4 (285-403)||(33486445-33486564)
chr4 (285-403)||(43014655-43014774)
chr4 (298-403)||(16895823-16895929)
chr4 (183-281)||(26870028-26870127)
chr4 (183-281)||(15650485-15650582)
chr4 (184-281)||(3839095-3839193)
chr4 (249-327)||(10259391-10259469)
chr4 (249-327)||(24077460-24077538)
chr4 (249-327)||(26924330-26924408)
chr4 (249-327)||(43332507-43332585)
chr4 (249-327)||(51452574-51452652)
chr4 (183-302)||(23992319-23992439)
chr4 (182-295)||(19591009-19591124)
chr4 (249-327)||(21564986-21565064)
chr4 (215-313)||(28120217-28120315)
chr4 (184-233)||(43014591-43014641)
chr4 (184-300)||(1975318-1975435)
chr4 (180-265)||(29706146-29706233)
chr4 (184-233)||(16895941-16895991)
chr4 (182-227)||(17741660-17741706)
chr4 (209-303)||(49711650-49711744)
chr4 (181-224)||(23479824-23479868)
chr4 (181-224)||(35707655-35707699)
chr4 (183-224)||(2118191-2118233)
chr4 (183-224)||(5759342-5759384)
chr4 (179-224)||(29713824-29713870)
chr4 (184-233)||(39713496-39713546)
chr4 (184-224)||(574177-574218)
chr4 (180-224)||(2777222-2777267)
chr4 (184-224)||(3759280-3759321)
chr4 (184-224)||(12680630-12680671)
chr4 (180-208)||(27892640-27892668)
chr4 (347-403)||(28973232-28973288)
chr4 (181-224)||(37352101-37352145)
chr4 (181-224)||(37357000-37357044)
chr4 (347-403)||(38008014-38008070)
[»] scaffold0103 (1 HSPs)
scaffold0103 (181-403)||(12839-13067)
[»] chr1 (25 HSPs)
chr1 (285-403)||(20767414-20767533)
chr1 (285-403)||(26429187-26429306)
chr1 (179-281)||(28565425-28565528)
chr1 (182-403)||(34265874-34266099)
chr1 (285-403)||(3929812-3929932)
chr1 (182-281)||(28631754-28631854)
chr1 (181-403)||(23909713-23909926)
chr1 (212-281)||(12714915-12714984)
chr1 (211-281)||(15317589-15317659)
chr1 (183-265)||(43118896-43118977)
chr1 (215-304)||(1954373-1954462)
chr1 (181-233)||(3929745-3929798)
chr1 (179-242)||(4893950-4894014)
chr1 (182-246)||(29693366-29693431)
chr1 (180-224)||(42682592-42682637)
chr1 (186-233)||(13662121-13662169)
chr1 (178-224)||(1375982-1376029)
chr1 (182-284)||(9112131-9112234)
chr1 (182-224)||(10763588-10763631)
chr1 (183-233)||(20767547-20767598)
chr1 (183-224)||(29840689-29840731)
chr1 (183-224)||(38896815-38896857)
chr1 (183-224)||(46623376-46623418)
chr1 (182-242)||(29184476-29184537)
chr1 (183-223)||(47137860-47137901)
[»] chr7 (28 HSPs)
chr7 (285-403)||(27840372-27840491)
chr7 (287-399)||(12960469-12960582)
chr7 (183-403)||(42298807-42299017)
chr7 (182-281)||(42996884-42996984)
chr7 (181-281)||(9226018-9226119)
chr7 (183-281)||(38434277-38434376)
chr7 (249-327)||(19033713-19033791)
chr7 (249-327)||(20720845-20720923)
chr7 (249-327)||(20765507-20765585)
chr7 (184-403)||(23476587-23476798)
chr7 (249-327)||(29491085-29491163)
chr7 (249-308)||(33230019-33230078)
chr7 (249-327)||(34282161-34282239)
chr7 (209-301)||(45121953-45122045)
chr7 (183-233)||(12960598-12960649)
chr7 (183-233)||(27840505-27840556)
chr7 (180-233)||(39278229-39278283)
chr7 (181-233)||(17817710-17817763)
chr7 (182-233)||(21669230-21669282)
chr7 (183-242)||(31896813-31896873)
chr7 (182-224)||(691289-691332)
chr7 (183-264)||(1484767-1484849)
chr7 (209-303)||(8998425-8998519)
chr7 (183-224)||(39647981-39648023)
chr7 (181-233)||(9151410-9151463)
chr7 (172-208)||(31299502-31299538)
chr7 (347-403)||(42687707-42687763)
chr7 (180-208)||(47573329-47573357)
[»] scaffold0088 (1 HSPs)
scaffold0088 (181-281)||(52690-52791)
[»] scaffold0051 (2 HSPs)
scaffold0051 (184-281)||(61656-61754)
scaffold0051 (182-224)||(55560-55603)
[»] scaffold0249 (1 HSPs)
scaffold0249 (182-281)||(24917-25016)
[»] scaffold0440 (1 HSPs)
scaffold0440 (190-290)||(8320-8421)
[»] scaffold0499 (1 HSPs)
scaffold0499 (209-301)||(10672-10764)
[»] scaffold0073 (1 HSPs)
scaffold0073 (209-303)||(33414-33508)
[»] scaffold0376 (1 HSPs)
scaffold0376 (183-281)||(10783-10879)
[»] scaffold0069 (1 HSPs)
scaffold0069 (182-242)||(14630-14691)
[»] scaffold0006 (1 HSPs)
scaffold0006 (186-233)||(151883-151931)
[»] scaffold0057 (1 HSPs)
scaffold0057 (183-233)||(17400-17451)
[»] scaffold0027 (1 HSPs)
scaffold0027 (183-224)||(143213-143255)
[»] scaffold0484 (1 HSPs)
scaffold0484 (181-220)||(8173-8213)
[»] scaffold0242 (1 HSPs)
scaffold0242 (347-403)||(3502-3558)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 6092988 - 6093364
Alignment:
Q  15 cagagaaggagaggtgagagggttaacattcaattagagttggtaggaggaattagaatgaaattttggtgatggatcaaagtcatgcatggttggaatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6092988 cagagaaggagaggtgagagggttaacattcaattagagttggtaggaggaattagaatgaaattttggtgatggatcaaagtcatgcatggttggaatc 6093087  T
Q  115 atcaggcttcttcatttatcaattgatcatgannnnnnngtgtgggttggactgatatttttggtttaaactagttacaaacccgtgcttcgcagagttg 214  Q
    ||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |||     
T  6093088 atcaggcttcttcatttatcaattgatcatgatttttt-gtgtaggttggactgatatttttggtgtaaactagttacaaacccgtgcttcgtagggtt- 6093185  T
Q  215 aataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagc 314  Q
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6093186 ----------cttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatgaaagc 6093275  T
Q  315 tctatcaaatcttgattcatgaaa-aaggatacattttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6093276 tctatcaagtcttgattcatgaaatatggatacattttgttcatgagaccagg-aaacatcataataattaagatgaaactaattggaac 6093364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 184 - 372
Target Start/End: Original strand, 44186859 - 44187041
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaaca 282  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |||||| |||| ||||||| ||||||||||||||||||||||||||    
T  44186859 actagttacaaacccgtgcttcgcacgagttcaataacgtaacttgtaaaaatattgttccaaacgaaaaataggcaaattaatggatattgcacaaaca 44186958  T
Q  283 ttagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaa-ggatacattttgttcatgagaccaggaaaaca 372  Q
    ||||||||||||||||||||||||| |||||||||||||| |        |||||||| |||||||||||| |||||||||||||||||||    
T  44186959 ttagaaatttttaccaaaatatttaccaaagctctatcaagt--------atgaaaaagggatacattttgctcatgagaccaggaaaaca 44187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 184 - 399
Target Start/End: Complemental strand, 30766547 - 30766330
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaaca 282  Q
    |||||||||||||| |||||||||| | |||||||||||||||||||||||   |||||| |||  ||||||||| ||||||| | ||||| || |||||    
T  30766547 actagttacaaacctgtgcttcgcacgggttgaataacgtatcttgtaaaacaattgttccaaaggaaaaataagtaaattaaggaatattacataaaca 30766448  T
Q  283 ttagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataa 381  Q
    |||||||| |||| ||||||||||| ||||||  || ||| |||||||| ||||||| || ||| ||||||||||||||| |||| ||||| ||||||||    
T  30766447 ttagaaatatttatcaaaatatttaccaaagccttaccaagtcttgattgatgaaaagagcatatattttgttcatgagatcaggcaaacaacataataa 30766348  T
Q  382 ttaagatgaaactaattg 399  Q
    ||||||| ||||||||||    
T  30766347 ttaagattaaactaattg 30766330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 188713 - 188594
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| ||||||||||||||||| |||| |||| ||| |||||||||||||||| | |||| | ||||||||||| ||||||||||||| || ||||||    
T  188713 agaaatatttaccaaaatatttatgaaagttctaccaagtcttgattcatgaaaagatgatatactttgttcatgaaaccaggaaaacatgatcataatt 188614  T
Q  384 aagatgaaactaattggaac 403  Q
    ||| ||||||||||||||||    
T  188613 aagttgaaactaattggaac 188594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 271 - 396
Target Start/End: Complemental strand, 23937418 - 23937290
Alignment:
Q  271 attgcacaaacattagaaat-ttttaccaaaa-tatttatcaaagctctatcaaatcttgattcatgaaaaag-gatacattttgttcatgagaccagga 367  Q
    |||| |||||||||| |||| ||||| ||||| ||||||| |||||||||  || |||||||||||||||| | |||| ||||||||||||||||||| |    
T  23937418 attgtacaaacattataaatcttttatcaaaaatatttatgaaagctctactaagtcttgattcatgaaaaggagatatattttgttcatgagaccagaa 23937319  T
Q  368 aaacatcataataattaagatgaaactaa 396  Q
    |||||| ||||||||||||||||||||||    
T  23937318 aaacataataataattaagatgaaactaa 23937290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 285 - 399
Target Start/End: Original strand, 37611459 - 37611574
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| |||| |||||||||||| ||||||||| ||| |||||||||||||||| |||||| | | ||||||||| | ||||||||||| || ||||||    
T  37611459 agaaatatttatcaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactatgttcatgaaatcaggaaaacatgatcataatt 37611558  T
Q  384 aagatgaaactaattg 399  Q
    ||| ||||||||||||    
T  37611559 aagttgaaactaattg 37611574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 403
Target Start/End: Original strand, 22759056 - 22759263
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | |||||| ||| ||| ||||||||   |||||  |||  ||||||| ||||||||| | |||||||||||||    
T  22759056 aactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaattgtttcaaaggaaaaata-gcaaattaaggaatattgcacaaac 22759154  T
Q  282 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaaggatacattttgttcatgagaccaggaaaacatcataataa 381  Q
    |||||            |||||||||||||| || || |   |||||||||||| ||||||||| |||||||||| ||||    ||||||| ||||||||    
T  22759155 attag------------aaatatttatcaaaactttaccgggtcttgattcatg-aaaaggatatattttgttcaagagattgagaaaacaacataataa 22759241  T
Q  382 ttaagatgaaactaattggaac 403  Q
    ||||||| ||||||||||||||    
T  22759242 ttaagattaaactaattggaac 22759263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 44072773 - 44072852
Alignment:
Q  248 aaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    ||||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  44072773 aaaaaattagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 44072852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 918865 - 918794
Alignment:
Q  256 agcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  918865 agcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 918794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 35437269 - 35437198
Alignment:
Q  210 agttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||||| ||||||||  ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  35437269 agttgaataacgtatattgtaaaaaatttgttccaaagaaaaaatgagcaaattaatgaatattgcacaaac 35437198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 26035813 - 26035911
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||| ||||| | ||||||||| |||||||||||||  ||| ||| ||| |||||||  ||||||||||  |||||||||||||    
T  26035813 aactagttacaaacccgtgcgtcgcacgggttgaataatgtatcttgtaaaatattttttc-aaaaaaaaaatgtgcaaattaataaatattgcacaaac 26035911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 188777 - 188727
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  188777 actagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 188727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 36164857 - 36164927
Alignment:
Q  211 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||   |||||||||| ||||||| || ||||||||  |||||||||||||    
T  36164857 gttgaataacgtatcttgtaaaaaaattgttctaaagaaaaaatgagtaaattaattaatattgcacaaac 36164927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 5241031 - 5240947
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaa 265  Q
    ||||||||||||||||||||||||||| | |||||||||||| | ||||||||   ||||||||||  |||||||  ||||||||    
T  5241031 aaactagttacaaacccgtgcttcgcacgggttgaataacgtgttttgtaaaaaaattgttctaaaggaaaaatattcaaattaa 5240947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 15315269 - 15315324
Alignment:
Q  180 ttaaactagttacaaacccgtgc-ttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  15315269 ttaaactagttacaaacccgtgctttcgcacgggttgaataacgtatcttgtaaaa 15315324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 39576575 - 39576525
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  39576575 actagttacaaacccgtgcttcgcacgagttgaataacgtattctgtaaaa 39576525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 54792723 - 54792789
Alignment:
Q  214 gaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||   |||||| |||  |||||| |||||||||||| ||||||||||||    
T  54792723 gaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 54792789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 8396809 - 8396757
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  8396809 aaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 8396757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 12157707 - 12157807
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    |||||||||||||| |||| ||||||| | |||||||  |||||| |||||||   |||||| |||  |||||| |||||||||||| ||||||| ||||    
T  12157707 aaactagttacaaatccgtacttcgcacgggttgaatttcgtatcctgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgctcaaa 12157806  T
Q  281 c 281  Q
    |    
T  12157807 c 12157807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 16496416 - 16496368
Alignment:
Q  186 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  16496416 tagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaa 16496368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 22477949 - 22477906
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  22477949 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 22477906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 4137399 - 4137441
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  4137399 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 4137441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 18688716 - 18688674
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  18688716 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 18688674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 35861044 - 35861002
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  35861044 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 35861002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 52843226 - 52843176
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||| ||||||||||| |||| || |||||    
T  52843226 actagttacaaacccgtgcttcgcacgagttgaataatgtattttttaaaa 52843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 19360735 - 19360776
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  19360735 actaattacaaacccgtgcttcgcatgagttgaataacgtat 19360776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 11383318 - 11383262
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  11383318 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 11383262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 16341861 - 16341805
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  16341861 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 16341805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 50742340 - 50742296
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||    
T  50742340 taaactagttacaaacccgtgcttcgcacgggttcaataacgtat 50742296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 50771295 - 50771351
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  50771295 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 50771351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 183 - 372
Target Start/End: Original strand, 32725990 - 32726180
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||| |||||||||||||||| | ||| ||||||||||||||||||| | || ||  ||||  |||||| |||||||||||||||||||| ||||    
T  32725990 aactagttataaacccgtgcttcgcatgggttcaataacgtatcttgtaaaaatattattacaaac-gaaaataggcaaattaatggatattgcataaac 32726088  T
Q  282 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaa-ggatacattttgttcatgagaccaggaaaaca 372  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  32726089 attagaaatttttaccaaaatatttacgaaagctctatcaagtcttgattcatgaaaaagggatacattttgctcatgagaccaggaaaaca 32726180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 403
Target Start/End: Complemental strand, 7364757 - 7364653
Alignment:
Q  299 aaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataattaagatgaaactaat 397  Q
    ||||||||| |||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||||||||||| || |||| |||  ||||||||||    
T  7364757 aaatatttaccaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccaggaaaacatgatcataa-taaattgaaactaat 7364659  T
Q  398 tggaac 403  Q
    ||||||    
T  7364658 tggaac 7364653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 403
Target Start/End: Original strand, 1691425 - 1691637
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcacaa 279  Q
    ||||||||||||||||||||||||||| | |||||| ||| ||| ||||||||    || ||  ||| ||||||| |||||||||| | |||||||||||    
T  1691425 aaactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaaattatttcaaagaaaaaatgagcaaattaaggaatattgcacaa 1691524  T
Q  280 acattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataa 378  Q
    |||||||||||            |||| |||||||| ||||   ||||||||||| |||| || ||| |||||||||||||||    ||||||| |||||    
T  1691525 acattagaaat------------atttctcaaagctttatcgggtcttgattcataaaaagagcatatattttgttcatgagattgagaaaacaacataa 1691612  T
Q  379 taattaagatgaaactaattggaac 403  Q
    |||||||||| ||||||||||||||    
T  1691613 taattaagattaaactaattggaac 1691637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 315
Target Start/End: Complemental strand, 24279062 - 24278962
Alignment:
Q  215 aataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagc 314  Q
    ||||| |||||||||||||   ||||||  ||  |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||    
T  24279062 aataatgtatcttgtaaaaaaattgttccgaaggaaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagc 24278963  T
Q  315 t 315  Q
    |    
T  24278962 t 24278962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 35357671 - 35357755
Alignment:
Q  243 taaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||| ||||||| |||||||||||| |||||| |||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  35357671 taaaaaaaaaatgagcaaattaatgaatattgtacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 35357755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 3711132 - 3711054
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||  | |||||||||||    
T  3711132 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaaaatttatcaaatctt 3711054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 11866284 - 11866362
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| ||| || |||||| ||||    
T  11866284 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaaactttatcaagtctt 11866362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 7364823 - 7364771
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  7364823 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 7364771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 30922096 - 30922167
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaa 252  Q
    |||||||||||||||||||||||| || | ||||||| |||||||||||||||  ||||||||||| |||||    
T  30922096 aaactagttacaaacccgtgcttcacacgggttgaattacgtatcttgtaaaaaatttgttctaaagaaaaa 30922167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 17026158 - 17026060
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||||||||||   ||| | |||||||||| ||||||||||||  ||||||  |||  | |||| |||||||||||| |||||||||||||    
T  17026158 aactagttacaaacccgtgcga-gcacgggttgaataacatatcttgtaaaaaatttgttncaaaggagaaatnagcaaattaatgaatattgcacaaac 17026060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 25124044 - 25124141
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||||||| | ||||||| || ||||||||||||   |||||  |||  |||||| || ||||||| | ||||||||||||    
T  25124044 actagttacaaacccgtgcttcgcacgggttgaattacatatcttgtaaaaaaattgtttcaaaggaaaaatgagtaaattaaggaatattgcacaaa 25124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 25282349 - 25282397
Alignment:
Q  351 tgttcatgagaccaggaaaacatcataataattaagatgaaactaattg 399  Q
    ||||| ||||| |||||||| | ||||||||||||||||||||||||||    
T  25282349 tgttcgtgagatcaggaaaataacataataattaagatgaaactaattg 25282397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 4289027 - 4289078
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  4289027 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 4289078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 10820973 - 10821070
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||   |||||||||| | ||||||||||||| ||| |||||  ||||||| ||| ||||||  |||||||||||| |||||| ||||||    
T  10820973 actagttacaaatttgtgcttcgcacgggttgaataacgtaacttataaaaaatttgttc-aaaaaaaaaaagagcaaattaatgaatattgaacaaac 10821070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 16723661 - 16723703
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  16723661 aactagttacaaacccgtgcttcgcacgagttcaataacgtat 16723703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 17092315 - 17092245
Alignment:
Q  211 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||| ||||||||||||  ||||||| |||  | |||| ||||| |||||| |||||||||||||    
T  17092315 gttgaataacatatcttgtaaaaaatttgttccaaaggagaaatgagcaatttaatgaatattgcacaaac 17092245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 9916707 - 9916748
Alignment:
Q  184 actagttacaaacccgtgcttcgcaga-gttgaataacgtat 224  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  9916707 actagttacaaacccgtgcttcgcacaggttgaataacgtat 9916748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 14753645 - 14753577
Alignment:
Q  211 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    |||||| ||| |||||| |||||  ||| ||||||| |||||||| ||||||||||| ||||||||||||    
T  14753645 gttgaacaacatatcttataaaaaatttattctaaagaaaaaata-gcaaattaatgaatattgcacaaa 14753577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 28609998 - 28609953
Alignment:
Q  180 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  28609998 ttaaactagttacaaacccgtgctttgcacgggttgaataacgtat 28609953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 17037511 - 17037455
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| |||| |||||||||| | | |||||||| |||| ||||||||||||    
T  17037511 attttgttcaagagatcaggaaaacaactttataattaacatgatactaattggaac 17037455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 22374080 - 22374132
Alignment:
Q  183 aactagttacaaacccgtgcttc-gca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||| ||||||||||||||||| ||| | |||||||||||||||||||||||    
T  22374080 aactacttacaaacccgtgcttcagcacgggttgaataacgtatcttgtaaaa 22374132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 26827742 - 26827686
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  26827742 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 26827686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 183 - 403
Target Start/End: Original strand, 12660957 - 12661179
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||||||||   || ||  ||    |||||||||||||||||| |||||||||||||    
T  12660957 aactagttacaaacccgtgcttcgcatgggttaaataacgtatcttgtaaaaaaattatttcaagatgaaaataagcaaattaatgaatattgcacaaac 12661056  T
Q  282 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataata 380  Q
    ||||||||| |||| | |||||||||| |||||  |  ||| |||||||||||||||| |  |||  |||||||||| | || |||||||||||||||||    
T  12661057 attagaaatatttatccaaatatttatgaaagcctttccaagtcttgattcatgaaaacaacatatgttttgttcataatactaggaaaacatcataata 12661156  T
Q  381 attaagatgaaactaattggaac 403  Q
    |||||||||||||||||||||||    
T  12661157 attaagatgaaactaattggaac 12661179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 27272728 - 27272620
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||| |  |||||||||||| |||||| |||||||||| | |||||||||||||    
T  27272728 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaataaatttgttctaaacgaaaaatgagcaaattaaagaatattgcacaaac 27272629  T
Q  282 attagaaat 290  Q
    |||||||||    
T  27272628 attagaaat 27272620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 11697086 - 11696967
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| |||| |||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  11697086 agaaatatttatcaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 11696987  T
Q  384 aagatgaaactaattggaac 403  Q
    ||| ||||||||||||||||    
T  11696986 aagttgaaactaattggaac 11696967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 403
Target Start/End: Original strand, 4634853 - 4635004
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaaggatacat 348  Q
    |||||| |||||||||||| |||||||||||||| ||   || |||| | |||||||||| |||||| || ||| | ||||||||||||||  |||| ||    
T  4634853 aaaaatgagcaaattaatgaatattgcacaaacactatttatctttatc-aaatatttatgaaagctttaccaagtattgattcatgaaaa--gatatat 4634949  T
Q  349 tttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    ||||||||||||  ||||||||||| || | ||||||||||||||||||||||||    
T  4634950 tttgttcatgagttcaggaaaacattattaaaattaagatgaaactaattggaac 4635004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 12249910 - 12250010
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  12249910 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 12250009  T
Q  281 c 281  Q
    |    
T  12250010 c 12250010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 23626054 - 23626154
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  23626054 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 23626153  T
Q  281 c 281  Q
    |    
T  23626154 c 23626154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 39445297 - 39445197
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  39445297 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 39445198  T
Q  281 c 281  Q
    |    
T  39445197 c 39445197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 280
Target Start/End: Complemental strand, 41908053 - 41907954
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||||||||| | |||||||||  |||||| |||||  ||||||||||| ||||||| |||||||||||| ||||||||||||    
T  41908053 aaactagttacaaacccgtgcttcgcacgggttgaataatatatcttataaaaaatttgttctaaagaaaaaatgagcaaattaatgaatattgcacaaa 41907954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 327
Target Start/End: Original strand, 44213034 - 44213180
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||| | ||| | ||| |||||||||| || |||||    | || ||||  |||||| |||||||||||| ||||||||||||    
T  44213034 aaactagttacaaacccgtgcgttgcacgggtttaataacgtattttataaaaaaaatattttaaaagaaaaatgagcaaattaatgaatattgcacaaa 44213133  T
Q  281 cattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    ||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  44213134 cattataaatctttatcaaaatatttatgaaagctttatcaagtctt 44213180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 2961008 - 2961105
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||  |||||||  || |||||||  ||||||||||| |||||| ||||||    
T  2961008 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc--aaaaaaaaatgtgcaaattaatgaatattgaacaaac 2961105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 20662985 - 20663063
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  20662985 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 20663063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 30548348 - 30548426
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| | |||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  30548348 aaaaatgatcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 30548426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 11697151 - 11697101
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  11697151 actagttacaaacccgtgctttgcacgggttgaataacgtatcttgtaaaa 11697101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 32569575 - 32569656
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaat 262  Q
    ||||||||||||||||||||||||||| | ||||||| |||||| || |||||   ||||||||||  |||||| |||||||    
T  32569575 aaactagttacaaacccgtgcttcgcacgggttgaattacgtattttctaaaatgattgttctaaaggaaaaatgagcaaat 32569656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 39204908 - 39204807
Alignment:
Q  182 aaactagttacaaacccgtgcttcgcaga-gttgaataacgtatcttgtaaaagttttgttctaaa-caaaaaataagcaaattaatggatattgcacaa 279  Q
    ||||||||||||||||||||||| ||| | |||||||||| |||||| |||||  || |||| |||  ||||||| || ||||||||  |||||||||||    
T  39204908 aaactagttacaaacccgtgctttgcacaggttgaataacttatcttataaaaaattagttccaaagaaaaaaatgagtaaattaataaatattgcacaa 39204809  T
Q  280 ac 281  Q
    ||    
T  39204808 ac 39204807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 18375557 - 18375608
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  18375557 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 18375608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 24055884 - 24055841
Alignment:
Q  182 aaactagttacaaacccgtgcttcgcaga-gttgaataacgtat 224  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  24055884 aaactagttacaaacccgtgcttcgcacaggttgaataacgtat 24055841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 41158686 - 41158635
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  41158686 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 41158635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 8307504 - 8307590
Alignment:
Q  180 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaa 265  Q
    |||||||| |||||||||||||||||||| | ||||||||| |||| || |||||   |||||  ||| ||||||| ||||||||||    
T  8307504 ttaaactaattacaaacccgtgcttcgcacgtgttgaataatgtattttctaaaataattgttacaaagaaaaaatgagcaaattaa 8307590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 36778522 - 36778480
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  36778522 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 36778480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 40586443 - 40586484
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  40586443 actagttacaaacccgtgcttcgcacgggttgaataacgtat 40586484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 7391364 - 7391324
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgt 222  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  7391364 aactagttacaaacccgtgcttcgcacgggttgaataacgt 7391324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 8160417 - 8160461
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  8160417 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 8160461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 8763057 - 8763013
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  8763057 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 8763013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 21543247 - 21543180
Alignment:
Q  211 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 279  Q
    ||||||||||||||||| |||||   |||||  |||  |||||| ||||||||||||||||||||||||    
T  21543247 gttgaataacgtatcttataaaa-aattgtttcaaaagaaaaatgagcaaattaatggatattgcacaa 21543180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 27273922 - 27273878
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||    
T  27273922 taaactagttacaaacccgtgcttcgcacgggttcaataacgtat 27273878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 38993634 - 38993578
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  38993634 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 38993578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 44599653 - 44599597
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  44599653 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 44599597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 403
Target Start/End: Original strand, 2366839 - 2367061
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||||| ||| |||||| | |||||||||||||||||||||||   || |||||||  |||||| |||||||||| | ||||||||||||     
T  2366839 aactagttacaaacctgtgtttcgcacgggttgaataacgtatcttgtaaaaaaattattctaaaggaaaaatgagcaaattaaggaatattgcacaaat 2366938  T
Q  282 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataata 380  Q
    ||||||||  |||| ||||||||||| ||||||  |||||  |||||||||||||||| || ||| ||||||||||||| |  ||||||||| ||||||     
T  2366939 attagaaagatttatcaaaatatttaacaaagccttatcaggtcttgattcatgaaaagagcatatattttgttcatgaaataaggaaaacaacataatt 2367038  T
Q  381 attaagatgaaactaattggaac 403  Q
     ||||||| ||||||||||||||    
T  2367039 gttaagattaaactaattggaac 2367061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 22602699 - 22602818
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  22602699 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 22602798  T
Q  384 aagatgaaactaattggaac 403  Q
    ||| ||||||||||||||||    
T  22602799 aagttgaaactaattggaac 22602818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 9702751 - 9702652
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| |||||||||||||    
T  9702751 aactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 9702652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 19365984 - 19365869
Alignment:
Q  186 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacatt 284  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||    |||| |||| ||||||| |||||||||| | ||||||||||||||||    
T  19365984 tagttacaaacccgtgcttcgcatgggttgaataacgtatcttgtaaaaaaaatgttttaaagaaaaaatgagcaaattaaggaatattgcacaaacatt 19365885  T
Q  285 agaaatttttaccaaa 300  Q
    | |||| |||| ||||    
T  19365884 ataaatatttatcaaa 19365869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 285 - 399
Target Start/End: Original strand, 36366189 - 36366304
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| ||||||||||||||||| |||||| || ||| |||||||||||||||| |||||| | ||||||| ||| | ||||||||||| || ||||||    
T  36366189 agaaatatttaccaaaatatttatgaaagctttaccaagtcttgattcatgaaaataggatatactttgttcctgaaatcaggaaaacatgatcataatt 36366288  T
Q  384 aagatgaaactaattg 399  Q
    ||| ||||||||||||    
T  36366289 aagttgaaactaattg 36366304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 9809820 - 9809918
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||||||  ||||||| ||| |||||||  ||||||||||| |||||||||||||    
T  9809820 aactagttacaaacccgtgcttcgcacgggttgaataatgtatcttgtaaaaaatttgttc-aaaaaaaaaatgtgcaaattaatgaatattgcacaaac 9809918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 12702061 - 12702158
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||||||||||||||| | ||||||||| |||||||||||||  ||||||| ||| |||||||  ||||||||||| |||||||||||||    
T  12702061 actagttacaaacccgtgcttcgcacgggttgaataatgtatcttgtaaaaaatttgttc-aaaaaaaaaatgtgcaaattaatgaatattgcacaaac 12702158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 32977100 - 32977209
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||||||||   |||||  ||| ||||||| || |||||||   ||||||||||||    
T  32977100 aaactagttacaaaccggtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgtttcaaagaaaaaatgagtaaattaagaaatattgcacaaa 32977199  T
Q  281 cattagaaat 290  Q
    ||||||||||    
T  32977200 cattagaaat 32977209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 7863528 - 7863624
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||| ||| ||||| |  ||||||||||| |||||||||||||    
T  7863528 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaagt--gcaaattaatgaatattgcacaaac 7863624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 18037229 - 18037353
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttga-ataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    |||||||||||||| ||||||||||| | ||||| |||||||||| |||||||   |||||||  |  |||||| |||||||||||| ||||||||||||    
T  18037229 aactagttacaaactcgtgcttcgcacgggttgagataacgtatcatgtaaaaaaattgttcttgaggaaaaatgagcaaattaatgaatattgcacaaa 18037328  T
Q  281 cattagaaatttttaccaaaatatt 305  Q
    ||||| |||| |||| |||||||||    
T  18037329 cattataaatctttatcaaaatatt 18037353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 403
Target Start/End: Original strand, 38041490 - 38041701
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    |||||||||||||||||||||||||| | |||||| ||| ||| ||||||||    |||||  ||| ||||||| |||||||||| | ||||||||||||    
T  38041490 aactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaagttgtttcaaagaaaaaatgagcaaattaaggaatattgcacaaa 38041589  T
Q  281 cattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataat 379  Q
     |||||            ||||||||||||||||| || |   ||||||||||| |||| || ||| |||||||||| ||||    ||||||| ||||||    
T  38041590 tattag------------aaatatttatcaaagctttaccgggtcttgattcataaaaagagcatatattttgttcacgagattgagaaaacaacataat 38041677  T
Q  380 aattaagatgaaactaattggaac 403  Q
    ||||||||| ||||||||||||||    
T  38041678 aattaagattaaactaattggaac 38041701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 36366123 - 36366175
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  36366123 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 36366175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 12763092 - 12763174
Alignment:
Q  199 gtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||| | |||||||||||||||||||||||  ||||||| ||| |||||||  ||||||||||| |||||||||||||    
T  12763092 gtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaaatgtgcaaattaatgaatattgcacaaac 12763174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 22602634 - 22602685
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  22602634 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 22602685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 37464554 - 37464476
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| |||||||||||| |||| |||| |||| |||||||||||| ||| || |||||| ||||    
T  37464554 aaaaatgagcaaattaatgaatattgcacaaaaattataaatctttatcaaaatatttatgaaaactttatcaagtctt 37464476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 42819330 - 42819380
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  42819330 actagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 42819380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 8350292 - 8350241
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||| |||||||||||||| | | |||||||||||||||||||||||    
T  8350292 aactagttataaacccgtgcttcgtacgggttgaataacgtatcttgtaaaa 8350241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 34719500 - 34719449
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  34719500 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 34719449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 25695539 - 25695589
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  25695539 actagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 25695589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 3086433 - 3086474
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  3086433 actagttacaaacccgtgcttcgcacgggttgaataacgtat 3086474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 752053 - 752097
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  752053 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 752097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 13596962 - 13596910
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||||| | ||||||| |||||| || |||||    
T  13596962 aaactagttacaaacccgtgcttcgcacgggttgaattacgtattttttaaaa 13596910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 34374426 - 34374482
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  34374426 attttgttcaagagattaggaaaacaacattataattaacatgacactaattggaac 34374482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 35539965 - 35540021
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  35539965 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 35540021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 183 - 403
Target Start/End: Original strand, 2624721 - 2624943
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||||||||   |||||  |||  |||||| || |||||||   | |||||||||||    
T  2624721 aactagttacaaacccgtgcatcgcacgggttgaataacgtatcttgtaaaaaaattgtttcaaaggaaaaatgagaaaattaagaaaaattgcacaaac 2624820  T
Q  282 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatg--aaaaaggatacattttgttcatgagaccaggaaaacatcataat 379  Q
    |||| |||| |||| |||||||||||| |||||  || ||| |||||||| |||  |||||  ||| |||||||||||||||||| |||||||||||||     
T  2624821 attaaaaatatttatcaaaatatttatgaaagccttaccaagtcttgatttatgaaaaaaaacatatattttgttcatgagaccacgaaaacatcataa- 2624919  T
Q  380 aattaagatgaaactaattggaac 403  Q
     ||||||| |||||||||||||||    
T  2624920 gattaagaagaaactaattggaac 2624943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 401
Target Start/End: Original strand, 22975720 - 22975937
Alignment:
Q  186 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacatt 284  Q
    |||||||||| | |||||||||| | |||||||||||||||||||||||   |||||| |||  |||||| ||||||||||   | ||||||||||||||    
T  22975720 tagttacaaatctgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaagaaaaattgcacaaacatt 22975819  T
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatg---aaaaaggatacattttgttcatgagaccaggaaaacatcataataa 381  Q
    | |||| |||| |||||||||||| |||| |||  | | |||||||| |||   |||||  ||| |||||||||||||||||| |||||||||||||  |    
T  22975820 aaaaatatttatcaaaatatttatgaaag-tcttaccagtcttgatttatgaaaaaaaaacatatattttgttcatgagaccacgaaaacatcataa-ga 22975917  T
Q  382 ttaagatgaaactaattgga 401  Q
    ||||||||||||||||||||    
T  22975918 ttaagatgaaactaattgga 22975937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 401
Target Start/End: Complemental strand, 23812681 - 23812464
Alignment:
Q  186 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacatt 284  Q
    |||||||||| | |||||||||| | |||||||||||||||||||||||   |||||| |||  |||||| ||||||||||   | ||||||||||||||    
T  23812681 tagttacaaatctgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaagaaaaattgcacaaacatt 23812582  T
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatg---aaaaaggatacattttgttcatgagaccaggaaaacatcataataa 381  Q
    | |||| |||| |||||||||||| |||| |||  | | |||||||| |||   |||||  ||| |||||||||||||||||| |||||||||||||  |    
T  23812581 aaaaatatttatcaaaatatttatgaaag-tcttaccagtcttgatttatgaaaaaaaaacatatattttgttcatgagaccacgaaaacatcataa-ga 23812484  T
Q  382 ttaagatgaaactaattgga 401  Q
    ||||||||||||||||||||    
T  23812483 ttaagatgaaactaattgga 23812464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 1932382 - 1932283
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | |||||||| ||||||||||||||  ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  1932382 aactagttacaaacccgtgcttcgcacgggttgaatatcgtatcttgtaaaaaatttgttccaaagaaaaaatgagcaaattaatgaatattgcacaaac 1932283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 11470837 - 11470955
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaa-aaaggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||| | |||||| | ||||||||||| ||||||||||||| || |||| |    
T  11470837 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaacagaggatatactttgttcatgaaaccaggaaaacatgatcataa-t 11470935  T
Q  384 aagatgaaactaattggaac 403  Q
    ||| ||||||||||||||||    
T  11470936 aagttgaaactaattggaac 11470955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 403
Target Start/End: Complemental strand, 33300710 - 33300486
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||| ||||||| | |||||||| ||||| |||||||| | |||||  |||  |||||| || ||||||| | ||||| |||||||    
T  33300710 aactagttacaaacccgtacttcgcacgggttgaatatcgtatattgtaaaaatattgtttcaaaggaaaaatgagtaaattaaggaatatttcacaaac 33300611  T
Q  282 attagaaatttttaccaaaa-tat-ttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataa 378  Q
    ||||||||| |||| ||    | | ||||||||||  || |   |||||||||||||||| || ||| ||||||||||||||| || ||| ||| |||||    
T  33300610 attagaaatatttatcatttgtgtcttatcaaagccttacctggtcttgattcatgaaaagagcatatattttgttcatgagatcaagaacacaacataa 33300511  T
Q  379 taattaagatgaaactaattggaac 403  Q
    |||||||||| ||||||||||||||    
T  33300510 taattaagattaaactaattggaac 33300486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 403
Target Start/End: Original strand, 18389232 - 18389336
Alignment:
Q  299 aaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataattaagatgaaactaat 397  Q
    ||||||||| |||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||||||||||| || |||| |||  ||||||||||    
T  18389232 aaatatttaccaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccaggaaaacatgatcataa-taaattgaaactaat 18389330  T
Q  398 tggaac 403  Q
    ||||||    
T  18389331 tggaac 18389336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 33319092 - 33318995
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||| ||| ||||| |  ||||||||||| ||||||||||||    
T  33319092 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaagt--gcaaattaatgaatattgcacaaa 33318996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 4425951 - 4425851
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    |||||||||||||||||||| |||||| | ||||| |||||||||||||||||   || ||| ||| ||||||| |||||||||||| ||||||||||||    
T  4425951 aaactagttacaaacccgtgtttcgcacgggttgactaacgtatcttgtaaaaaaattattccaaagaaaaaatgagcaaattaatgaatattgcacaaa 4425852  T
Q  281 c 281  Q
    |    
T  4425851 c 4425851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 250098 - 250020
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  250098 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 250020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 12579844 - 12579922
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  12579844 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 12579922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 15391894 - 15391971
Alignment:
Q  14 gcagagaaggagaggtgagagggttaacattcaattagagttggtaggaggaattagaatgaaattttggtgatggat 91  Q
    |||||||||||||||||||||  | |||| |||||||||| ||||||| | ||||||||||| |||||||||||||||    
T  15391894 gcagagaaggagaggtgagagattcaacactcaattagaggtggtaggggcaattagaatgagattttggtgatggat 15391971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 327
Target Start/End: Complemental strand, 33979226 - 33979081
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||| |||||| | ||| |||||||||| ||||||||    || ||  |||  |||||| |||||||||||| |||||||||||||    
T  33979226 actagttacaaacccgtgtttcgcacgggtttaataacgtattttgtaaaaaaaattatttcaaaagaaaaatgagcaaattaatgaatattgcacaaac 33979127  T
Q  282 attagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||| |||| |||| |||||||||||| |||| | |||||| ||||    
T  33979126 attataaatctttatcaaaatatttatgaaagttttatcaagtctt 33979081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 11272739 - 11272664
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatga 359  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| | ||| |||||||    
T  11272739 agaaatatttaccaaaatatttatgaaagctctaccaaatcttgattcatgaaaagaggatatactttattcatga 11272664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 18389166 - 18389218
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  18389166 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 18389218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 3052060 - 3052128
Alignment:
Q  237 ttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatt 305  Q
    ||||||| || ||||||| |||||||||||| |||||||||||| |||| |||| |||| |||||||||    
T  3052060 ttgttctgaagaaaaaatgagcaaattaatgaatattgcacaaatattataaatctttatcaaaatatt 3052128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 5753125 - 5753213
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatatt 273  Q
    ||||||||||||||||||| ||||||| | |||||||||||||| ||||||||  ||||||    | ||||||| |||||||||||| |||||    
T  5753125 aaactagttacaaacccgtacttcgcacgggttgaataacgtatattgtaaaaaatttgtt----aaaaaaaatgagcaaattaatgaatatt 5753213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 8615112 - 8615029
Alignment:
Q  196 cccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||| | |||||||||||||||||||||||  ||||||| ||| ||||| |  ||||||||||| |||||||||||||    
T  8615112 cccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaagt--gcaaattaatgaatattgcacaaac 8615029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 11272804 - 11272753
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||||||||    
T  11272804 aactagttacaaatccgtgcttcgcacgagttgaataatgtatcttgtaaaa 11272753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 24447838 - 24447786
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  24447838 aaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 24447786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 6966235 - 6966278
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  6966235 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 6966278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 25540891 - 25540849
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  25540891 aactagttacaaacccgtgcttcgcacgagttcaataacgtat 25540849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 4110102 - 4110061
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  4110102 actagttacaaacccgtgcttcgcacgggttgaataacgtat 4110061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 30044399 - 30044343
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  30044399 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 30044343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 33319564 - 33319616
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||| |||||||||||| |||||||||||| ||| || |||||    
T  33319564 aaactagttacaaatccgtgcttcgcacgagttgaataacatattttttaaaa 33319616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 35160166 - 35160114
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||| |||||||||||| | |||||||||||||| || |||||    
T  35160166 aaactagttacaaatccgtgcttcgcacgggttgaataacgtattttttaaaa 35160114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 184 - 403
Target Start/End: Complemental strand, 56541807 - 56541585
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaaca 282  Q
    |||||||||||||| |||||||||| | |||||||||||||||| ||||||   || ||  |||  |||||||||||||||||   |  |||||||||||    
T  56541807 actagttacaaacctgtgcttcgcacgggttgaataacgtatctcgtaaaaaaattatttcaaaggaaaaataagcaaattaagaaaagttgcacaaaca 56541708  T
Q  283 ttagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaaagga---tacattttgttcatgagaccaggaaaacatcataat 379  Q
    |||||||| |||| |||  ||||||| ||||   || ||  ||||| |||||||||||  |   || |||||||||||||||||||||||||||||||||    
T  56541707 ttagaaatatttatcaat-tatttatgaaagtcttaccaggtcttgtttcatgaaaaaaaaacatatattttgttcatgagaccaggaaaacatcataat 56541609  T
Q  380 aattaagatgaaactaattggaac 403  Q
    ||||||||||||||||||||||||    
T  56541608 aattaagatgaaactaattggaac 56541585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 33486445 - 33486564
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  33486445 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 33486544  T
Q  384 aagatgaaactaattggaac 403  Q
    ||| ||||||||||||||||    
T  33486545 aagttgaaactaattggaac 33486564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 43014655 - 43014774
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  43014655 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 43014754  T
Q  384 aagatgaaactaattggaac 403  Q
    ||| ||||||||||||||||    
T  43014755 aagttgaaactaattggaac 43014774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 298 - 403
Target Start/End: Complemental strand, 16895929 - 16895823
Alignment:
Q  298 aaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataattaagatgaaactaa 396  Q
    ||||||||||| ||||||||| ||| |||||||||||||||| |||||| |  |||||||||| ||||||||||||| |||||||||||| || ||||||    
T  16895929 aaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatataccttgttcatgaaaccaggaaaacatgataataattaagttgcaactaa 16895830  T
Q  397 ttggaac 403  Q
    |||||||    
T  16895829 ttggaac 16895823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 26870028 - 26870127
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||| ||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| |||||||||||||    
T  26870028 aactagttacaaacccgtgctttgcacgggttgaataacatatcttgtaaaaaatttgttcaaaaggaaaaatgagcaaattaatgaatattgcacaaac 26870127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 15650485 - 15650582
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||  |||||||  || |||||||  ||||||||||| |||||| ||||||    
T  15650485 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc--aaaaaaaaatgtgcaaattaatgaatattgaacaaac 15650582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 3839095 - 3839193
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||   ||||||  || ||||||| | |||||||||  |||||||||||||    
T  3839095 actagttacaaacccgtgcttcgcaagggttgaataacgtatcttgtaaaaaaattgttcctaagaaaaaatgaacaaattaataaatattgcacaaac 3839193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 10259391 - 10259469
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  10259391 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 10259469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 24077460 - 24077538
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  24077460 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 24077538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 26924330 - 26924408
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  26924330 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 26924408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 43332585 - 43332507
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  43332585 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 43332507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 51452652 - 51452574
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  51452652 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 51452574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 23992319 - 23992439
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||||| ||| |||||| | ||||||||||||||| | |||||  ||||||| |||  |||||| ||||||||| || |||||||||||||    
T  23992319 aactagttacaaacctgtgtttcgcacgggttgaataacgtatcgtttaaaaaatttgttccaaaggaaaaatgagcaaattactgaatattgcacaaac 23992418  T
Q  282 attagaaatttttaccaaaat 302  Q
    |||  |||| |||| ||||||    
T  23992419 attttaaatatttatcaaaat 23992439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 295
Target Start/End: Complemental strand, 19591124 - 19591009
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgt-aaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 279  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||    | ||  |||  |||||| |||||||||||| |||||||||||    
T  19591124 aaactagttacaaacccgtgcttcgcacgggtttaataacgtatcttgtaaaaaaaaatatttcaaaggaaaaatgagcaaattaatgaatattgcacaa 19591025  T
Q  280 acattagaaattttta 295  Q
    |||||| |||| ||||    
T  19591024 acattataaatattta 19591009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 21565064 - 21564986
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| |||||||| |||||||| |||| |||| |||||||||||| |||| | |||||| ||||    
T  21565064 aaaaatgagcaaattaatgaatattgcataaacattataaatctttatcaaaatatttatgaaagttttatcaagtctt 21564986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 28120217 - 28120315
Alignment:
Q  215 aataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaag 313  Q
    |||||||||||||| ||||   |||||| |||  |||||| || ||||||||| ||||||||||||||||| |||| |||| || ||||||||| ||||    
T  28120217 aataacgtatcttgaaaaaaaattgttccaaaggaaaaatgagtaaattaatgaatattgcacaaacattataaatctttatcagaatatttatgaaag 28120315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 43014591 - 43014641
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  43014591 actagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 43014641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 1975435 - 1975318
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaaca 282  Q
    ||||||||||||||| ||||||||| | ||||||| || ||||||| ||||   |||||  |||  |||||| |||||||||| | |||||||||||| |    
T  1975435 actagttacaaacccatgcttcgcacgggttgaattacatatcttgcaaaaaaattgtttcaaaggaaaaatgagcaaattaaggaatattgcacaaata 1975336  T
Q  283 ttagaaatttttaccaaa 300  Q
    |||||||| |||| ||||    
T  1975335 ttagaaatatttatcaaa 1975318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 29706146 - 29706233
Alignment:
Q  180 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgt-aaaagttttgttctaaacaaaaaataagcaaattaa 265  Q
    |||||||||||| |||||||||||||||| |  |||||||||||||||||| ||||   ||||||||||  |||||| ||||||||||    
T  29706146 ttaaactagttataaacccgtgcttcgcacggattgaataacgtatcttgtaaaaaaaattgttctaaaagaaaaatgagcaaattaa 29706233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 16895991 - 16895941
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||||||    
T  16895991 actagttacaaacccatgcttcgcacgggttgaataacgtatcttgtaaaa 16895941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 17741706 - 17741660
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatctt 227  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||    
T  17741706 aaactagttacaaacccgtgtttcgcatgagttgaataacgtatctt 17741660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 49711650 - 49711744
Alignment:
Q  209 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaata 303  Q
    |||||||||||||||| |   ||||  ||||||| |||  |||||| |||||||||| | ||| |||||||||||||||||| |||| |||||||    
T  49711650 gagttgaataacgtatttcagaaaaaatttgttccaaaggaaaaatgagcaaattaaggaatagtgcacaaacattagaaatatttatcaaaata 49711744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 23479868 - 23479824
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||    
T  23479868 taaactagttacaaacccgtgcttcgcacgagttcaataacgtat 23479824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 35707655 - 35707699
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||||| | ||||||||||||||    
T  35707655 taaactagttacaaacccgtgcttcgcacgggttgaataacgtat 35707699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 2118233 - 2118191
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  2118233 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 2118191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 5759384 - 5759342
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  5759384 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 5759342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 29713870 - 29713824
Alignment:
Q  179 tttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||    
T  29713870 tttaaactagttacaaacccgtgctttgcacgggttgaataacgtat 29713824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 39713496 - 39713546
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  39713496 actagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 39713546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 574177 - 574218
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  574177 actagttacaaacccgtgcttcgcacgggttgaataacgtat 574218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 2777267 - 2777222
Alignment:
Q  180 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||    
T  2777267 ttaaactagttacaaacccgtgcttcgcacgggttcaataacgtat 2777222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 3759321 - 3759280
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  3759321 actagttacaaacccgtgcttcgcacgggttgaataacgtat 3759280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 12680630 - 12680671
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  12680630 actagttacaaacccgtgcttcgcacgggttgaataacgtat 12680671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 27892640 - 27892668
Alignment:
Q  180 ttaaactagttacaaacccgtgcttcgca 208  Q
    |||||||||||||||||||||||||||||    
T  27892640 ttaaactagttacaaacccgtgcttcgca 27892668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 28973288 - 28973232
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  28973288 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 28973232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 37352145 - 37352101
Alignment:
Q  181 taaactagttacaaacccgtgcttcgcaga-gttgaataacgtat 224  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  37352145 taaactagttacaaacccgtgctttgcacaggttgaataacgtat 37352101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 37357044 - 37357000
Alignment:
Q  181 taaactagttacaaacccgtgcttcgcaga-gttgaataacgtat 224  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  37357044 taaactagttacaaacccgtgctttgcacaggttgaataacgtat 37357000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 38008070 - 38008014
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  38008070 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 38008014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 181 - 403
Target Start/End: Complemental strand, 13067 - 12839
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 279  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||   |||||| |||  |||||| || |||||||   | |||||||||    
T  13067 taaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgaggaaattaagaaaaattgcacaa 12968  T
Q  280 acattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatg-------aaaaaggatacattttgttcatgagaccaggaaaaca 372  Q
    |||||| |||| |||| |||||||||||| |||||  || ||| |||| ||| |||       |||||  ||| |||||||||||||||||| |||||||    
T  12967 acattaaaaatatttatcaaaatatttatgaaagccttaccaagtctt-atttatgaagaaaaaaaaaacatatattttgttcatgagaccacgaaaaca 12869  T
Q  373 tcataataattaagatgaaactaattggaac 403  Q
    ||||||  |||||||||||| ||||||||||    
T  12868 tcataa-gattaagatgaaattaattggaac 12839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 20767533 - 20767414
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||||||||||| || ||||||    
T  20767533 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccaggaaaacatgatcataatt 20767434  T
Q  384 aagatgaaactaattggaac 403  Q
    | | ||||||||||||||||    
T  20767433 aggttgaaactaattggaac 20767414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 26429187 - 26429306
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | | ||||||||| | ||| ||||||| || ||||||    
T  26429187 agaaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactatgttcatgaaaacagaaaaacatgatcataatt 26429286  T
Q  384 aagatgaaactaattggaac 403  Q
    ||| ||||||||||||||||    
T  26429287 aagttgaaactaattggaac 26429306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 28565425 - 28565528
Alignment:
Q  179 tttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcac 277  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||   |||||| |||  |||||| |||||||||||| |||||||||    
T  28565425 tttaaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcac 28565524  T
Q  278 aaac 281  Q
    ||||    
T  28565525 aaac 28565528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 403
Target Start/End: Original strand, 34265874 - 34266099
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    |||||| ||||||||| |||||||||| | |||||||| ||||| ||||||||   |||||  ||| ||||||| |||||||||| | ||||| ||||||    
T  34265874 aaactaattacaaacctgtgcttcgcacgggttgaatatcgtatattgtaaaaaaattgtttcaaagaaaaaatgagcaaattaaggaatatttcacaaa 34265973  T
Q  281 cattagaaatttttacca-aaatat-ttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcata 377  Q
    |||||||||| |||| ||    | | ||||||||||  || ||  | |||||||||||||| || ||| ||||||||||||||| || ||| ||| ||||    
T  34265974 cattagaaatatttatcatttgtgtcttatcaaagccttaccaggtattgattcatgaaaagagcatatattttgttcatgagatcaagaacacaacata 34266073  T
Q  378 ataattaagatgaaactaattggaac 403  Q
    ||||||||||| ||||||||||||||    
T  34266074 ataattaagattaaactaattggaac 34266099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 3929812 - 3929932
Alignment:
Q  285 agaaatttttaccaaaa-tatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataat 382  Q
    |||||| |||||||||| ||||||| ||||||||| ||| |||||||||||||||| | |||| | ||||||||||| ||||||||||||  || |||||    
T  3929812 agaaatatttaccaaaaatatttatgaaagctctaccaagtcttgattcatgaaaagatgatatactttgttcatgaaaccaggaaaacacgatcataat 3929911  T
Q  383 taagatgaaactaattggaac 403  Q
    |||| ||||||||||||||||    
T  3929912 taagttgaaactaattggaac 3929932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 28631854 - 28631754
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  28631854 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 28631755  T
Q  281 c 281  Q
    |    
T  28631754 c 28631754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 403
Target Start/End: Original strand, 23909713 - 23909926
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcaca 278  Q
    |||||||||||||||||||||||||||| | |||||| ||| ||| ||||||||    |||||  ||| ||||||| |||||||||| | ||||||||||    
T  23909713 taaactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaaattgtttcaaagaaaaaatgagcaaattaaggaatattgcaca 23909812  T
Q  279 aacattagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcata 377  Q
    ||||||||            |||||||| |||||||| ||||   ||||||||||| |||| || ||| |||||||||||||||    ||||||| ||||    
T  23909813 aacattag------------aaatatttctcaaagctttatcgggtcttgattcataaaaagagcatatattttgttcatgagattgagaaaacaacata 23909900  T
Q  378 ataattaagatgaaactaattggaac 403  Q
    ||||||||||| ||||||||||||||    
T  23909901 ataattaagattaaactaattggaac 23909926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 12714984 - 12714915
Alignment:
Q  212 ttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||| | |||||| |||  |||||| |||||||||||| |||||||||||||    
T  12714984 ttgaataacgtatcttgtaaaaatattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 12714915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 15317659 - 15317589
Alignment:
Q  211 gttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||   |||||| |||  |||||| |||||||||||| |||||||||||||    
T  15317659 gttgaataacgtatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 15317589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 43118977 - 43118896
Alignment:
Q  183 aactagttacaaacccgtgcttcgcagagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaa 265  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||||   || |||||||  |||||||| ||||||||    
T  43118977 aactagttacaaacccgtgcttcgcag-gttgaataacatattttgtaaaaaaattattctaaaggaaaaataatcaaattaa 43118896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 304
Target Start/End: Original strand, 1954373 - 1954462
Alignment:
Q  215 aataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatat 304  Q
    |||||||||||||||||||   || ||| ||| ||||||| |||||||||||| ||||| |||||| ||||||||| |||| | ||||||    
T  1954373 aataacgtatcttgtaaaaaaattattccaaagaaaaaatgagcaaattaatgaatattacacaaatattagaaatctttatccaaatat 1954462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 3929745 - 3929798
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| |||||    
T  3929745 taaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttataaaa 3929798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 4894014 - 4893950
Alignment:
Q  179 tttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttc 242  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  4894014 tttaaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaaatttagttc 4893950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 29693431 - 29693366
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaa 246  Q
    ||||||||||||||||||||||||||| | ||||||| |||||| || |||||  |||||||||||    
T  29693431 aaactagttacaaacccgtgcttcgcacgggttgaattacgtattttttaaaaaatttgttctaaa 29693366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 42682637 - 42682592
Alignment:
Q  180 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||    
T  42682637 ttaaactagttacaaacccgtgcttcgcacgggttgaataacgtat 42682592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 13662121 - 13662169
Alignment:
Q  186 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  13662121 tagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaa 13662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 1376029 - 1375982
Alignment:
Q  178 gtttaaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  1376029 gtttaaactagttacaaacccgtgctttgcacgggttgaataacgtat 1375982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 9112234 - 9112131
Alignment:
Q  182 aaactagttacaaacccgtgcttcgcagag-ttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    |||||||||||||| ||||| ||||||  | || |||||| |||||| |||||   ||||| ||||  |||||| |||||||||||  ||||||||||||    
T  9112234 aaactagttacaaatccgtgtttcgcacggattaaataacatatcttataaaaaaattgttttaaaagaaaaatgagcaaattaataaatattgcacaaa 9112135  T
Q  281 catt 284  Q
    ||||    
T  9112134 catt 9112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 10763631 - 10763588
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  10763631 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 10763588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 20767598 - 20767547
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||| |  |||||||||||||||| |||||    
T  20767598 aactagttacaaacccgtgcttcgcacggcttgaataacgtatcttataaaa 20767547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 29840689 - 29840731
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  29840689 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 29840731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 38896857 - 38896815
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  38896857 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 38896815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 46623376 - 46623418
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  46623376 aactagttacaatcccgtgcttcgcacgagttgaataacgtat 46623418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 29184476 - 29184537
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttc 242  Q
    ||||||||||||||||||||||||||| |  ||||||||||||| || ||||| ||| ||||    
T  29184476 aaactagttacaaacccgtgcttcgcacggattgaataacgtattttttaaaaatttagttc 29184537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 47137901 - 47137860
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgta 223  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  47137901 aactagttacaaacccgtgcttcgcacgggttgaataacgta 47137860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 27840491 - 27840372
Alignment:
Q  285 agaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataatt 383  Q
    |||||| |||| |||||||||||| ||||||||| ||| |||||||||||||||| |||||| | ||||||||||| ||||| ||||||| || ||||||    
T  27840491 agaaatatttatcaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactttgttcatgaaaccagaaaaacatgatcataatt 27840392  T
Q  384 aagatgaaactaattggaac 403  Q
    ||| ||||||||||||||||    
T  27840391 aagttgaaactaattggaac 27840372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 287 - 399
Target Start/End: Complemental strand, 12960582 - 12960469
Alignment:
Q  287 aaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataataattaa 385  Q
    |||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||| | | ||||||||| | ||||||||||| || ||||||||    
T  12960582 aaatatttaccaaaatatttatgaaagctctaccaagtcttgattcatgaaaagaggatatactatgttcatgaaatcaggaaaacatgatcataattaa 12960483  T
Q  386 gatgaaactaattg 399  Q
    | ||||||||||||    
T  12960482 gttgaaactaattg 12960469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 403
Target Start/End: Original strand, 42298807 - 42299017
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||| |||| ||  || | |||||||||||||||||||||||   |||||||||||||||||| | | |||||| | |||||||||||||    
T  42298807 aactagttacaaactcgtgttttacacgggttgaataacgtatcttgtaaaaaaattgttctaaacaaaaaatgaactaattaaggaatattgcacaaac 42298906  T
Q  282 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacatcataata 380  Q
    ||||             |||||||||||||| |  || ||  ||||||||| |||||| || ||| ||||||| ||||||| |||||||||| |||||||    
T  42298907 atta------------taaatatttatcaaaacattaccaggtcttgattcttgaaaagagcatatattttgtccatgagatcaggaaaacaacataata 42298994  T
Q  381 attaagatgaaactaattggaac 403  Q
    |||||||| ||||||||||||||    
T  42298995 attaagattaaactaattggaac 42299017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 42996984 - 42996884
Alignment:
Q  182 aaactagttacaaacccgtgcttcgcagag-ttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||||||||| || ||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| ||||||||||||    
T  42996984 aaactagttacaaacccgtgcttcgcacaggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaa 42996885  T
Q  281 c 281  Q
    |    
T  42996884 c 42996884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 9226018 - 9226119
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 279  Q
    |||||||||||||||||||||||||||| | |||||||||| ||||||||||||   |||||| |||  |||||| |||||||||||| |||||||||||    
T  9226018 taaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaa 9226117  T
Q  280 ac 281  Q
    ||    
T  9226118 ac 9226119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 38434277 - 38434376
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||||||   |||||| |||  |||||| |||||||||||| |||||||||||||    
T  38434277 aactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 38434376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 19033713 - 19033791
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||| |||||| ||||    
T  19033713 aaaaatgagcaaattaatgaatattgcacaaacattataaatttttatcaaaatatttatgaaagctttatcaagtctt 19033791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 20720923 - 20720845
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||| |||||| ||||    
T  20720923 aaaaatgagcaaattaatgaatattgcacaaacattataaatttttatcaaaatatttatgaaagctttatcaagtctt 20720845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 20765585 - 20765507
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  20765585 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 20765507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 403
Target Start/End: Original strand, 23476587 - 23476798
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagtt-ttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    |||||||||||||||||||||| || | |||||||||| |||||| ||||| |  ||||||||||  |||||| ||||||||||   |||||||||||||    
T  23476587 actagttacaaacccgtgcttcacacgggttgaataacatatcttataaaaataattgttctaaaggaaaaatgagcaaattaagaaatattgcacaaac 23476686  T
Q  282 attagaaatttttaccaaaatatttatcaaagctctatcaaatcttgattcatgaaaa-aggatacattttgttcatgagaccaggaaaacat-cataat 379  Q
    |||||||||            |||||||||||   || ||| |||||||||||||||| |  ||| ||||||||||||||| ||  |||| |  ||||||    
T  23476687 attagaaat------------atttatcaaagtcttaccaagtcttgattcatgaaaataacatatattttgttcatgagaacaaaaaaaaaaacataat 23476774  T
Q  380 aattaagatgaaactaattggaac 403  Q
    ||||||||| ||||||||||||||    
T  23476775 aattaagattaaactaattggaac 23476798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 29491163 - 29491085
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||||| |||||| ||||    
T  29491163 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagctttatcaagtctt 29491085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 33230019 - 33230078
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttat 308  Q
    ||||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||    
T  33230019 aaaaataagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttat 33230078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 34282161 - 34282239
Alignment:
Q  249 aaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaatatttatcaaagctctatcaaatctt 327  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||| |||||||||||| |||| | |||||| ||||    
T  34282161 aaaaatgagcaaattaatgaatattgcacaaacattataaatctttatcaaaatatttatgaaagttttatcaagtctt 34282239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 45122045 - 45121953
Alignment:
Q  209 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaa 301  Q
    |||||||||||||||| | | ||||  ||||||| ||| ||||||| |||||||||| | ||| |||||||||||||||||| |||| |||||    
T  45122045 gagttgaataacgtatttcggaaaaaatttgttccaaagaaaaaatgagcaaattaaggaatagtgcacaaacattagaaatatttatcaaaa 45121953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 12960649 - 12960598
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  12960649 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaa 12960598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 27840556 - 27840505
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  27840556 aactagttacaaacccgtgctttgcacgggttgaataacgtatcttgtaaaa 27840505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 39278283 - 39278229
Alignment:
Q  180 ttaaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  39278283 ttaaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 39278229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 17817763 - 17817710
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||||| | |||||||||||| | ||||||||    
T  17817763 taaactagttacaaacccgtgcttcgcacgggttgaataacgtgttttgtaaaa 17817710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 21669230 - 21669282
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  21669230 aaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 21669282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 31896813 - 31896873
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttc 242  Q
    |||||||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  31896813 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaaatttagttc 31896873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 691332 - 691289
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  691332 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 691289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 1484849 - 1484767
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaatta 264  Q
    |||| ||||||||||||||||||||| | ||| |||||| ||| ||||||||   ||||||||||  |||||| |||||||||    
T  1484849 aactggttacaaacccgtgcttcgcacgggtttaataacatattttgtaaaataattgttctaaaggaaaaatgagcaaatta 1484767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 8998519 - 8998425
Alignment:
Q  209 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaata 303  Q
    |||||||||||||||| | | ||||   |||||| |||  |||||| |||||||||| | ||| |||| ||||||||||||| |||| |||||||    
T  8998519 gagttgaataacgtatttcgaaaaaaaattgttccaaaggaaaaatgagcaaattaaggaatagtgcaaaaacattagaaatatttatcaaaata 8998425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 39647981 - 39648023
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  39647981 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 39648023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 9151463 - 9151410
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||| ||||||||||||||||||||||| | |||||||||||||| || |||||    
T  9151463 taaattagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 9151410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 31299538 - 31299502
Alignment:
Q  172 tttttggtttaaactagttacaaacccgtgcttcgca 208  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  31299538 tttttggtataaactagttacaaacccgtgattcgca 31299502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 42687763 - 42687707
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| | |||||| |||||||||||||||||    
T  42687763 attttgttcaagagattaggaaaacaacattacaattaacatgaaactaattggaac 42687707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 47573329 - 47573357
Alignment:
Q  180 ttaaactagttacaaacccgtgcttcgca 208  Q
    |||||||||||||||||||||||||||||    
T  47573329 ttaaactagttacaaacccgtgcttcgca 47573357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 52690 - 52791
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaa 279  Q
    |||||||||||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||  |||||| |||||||||||| |||||||||||    
T  52690 taaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaa 52789  T
Q  280 ac 281  Q
    ||    
T  52790 ac 52791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 61754 - 61656
Alignment:
Q  184 actagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||||  ||||||| |||  |||||| |||||||||||| |||||||||||||    
T  61754 actagttacaaacccgtgcttcgcacgggttgaatatcgtatcttgtaaaaaatttgttccaaaggaaaaatgagcaaattaatgaatattgcacaaac 61656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 55603 - 55560
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtat 224  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  55603 aaactagttacaaacccgtgcttcgcacgagttgaataacgtat 55560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 24917 - 25016
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaa 280  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||| ||| ||||||   ||||||||||| ||||||||||||    
T  24917 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaatttgttc-aaaaaaaaaaagtgcaaattaatgaatattgcacaaa 25015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 290
Target Start/End: Original strand, 8320 - 8421
Alignment:
Q  190 tacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaa 288  Q
    |||| |||||||||||||| | |||||||||| ||||||||||||   |||||| |||  |||||| |||||||||||| ||||||||||||||||||||    
T  8320 tacagacccgtgcttcgcacgtgttgaataacatatcttgtaaaaaaattgttccaaaggaaaaatgagcaaattaatgaatattgcacaaacattagaa 8419  T
Q  289 at 290  Q
    ||    
T  8420 at 8421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 10672 - 10764
Alignment:
Q  209 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaa 301  Q
    |||||||||||||||| | | ||||  ||||||| |||  |||||| |||||||||| | ||| |||||||||||||||||| |||| |||||    
T  10672 gagttgaataacgtatttcggaaaaaatttgttccaaaggaaaaatgagcaaattaaggaatagtgcacaaacattagaaatatttatcaaaa 10764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 33414 - 33508
Alignment:
Q  209 gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaacattagaaatttttaccaaaata 303  Q
    ||||||||||| |||| ||| ||||  ||||||| |||  |||||| |||||||||| | ||  |||||||||||||||||| |||| |||||||    
T  33414 gagttgaataaagtattttggaaaaaatttgttccaaaggaaaaatgagcaaattaaggaatcgtgcacaaacattagaaatatttatcaaaata 33508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 10783 - 10879
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttctaaacaaaaaataagcaaattaatggatattgcacaaac 281  Q
    ||||||||||||||||||||   ||| | |||||||||||||||||||||||  ||||||   || |||||||  ||||||||||| || ||||||||||    
T  10783 aactagttacaaacccgtgcgaagcacgggttgaataacgtatcttgtaaaaaatttgtt---aaaaaaaaatgtgcaaattaatgaatcttgcacaaac 10879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 14691 - 14630
Alignment:
Q  182 aaactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaagttttgttc 242  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  14691 aaactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaaatttagttc 14630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 151883 - 151931
Alignment:
Q  186 tagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  151883 tagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaa 151931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 17400 - 17451
Alignment:
Q  183 aactagttacaaacccgtgcttcgca-gagttgaataacgtatcttgtaaaa 233  Q
    |||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  17400 aactagttacaaacccgtgcttcgcacgggttgaataacgtattttttaaaa 17451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 143213 - 143255
Alignment:
Q  183 aactagttacaaacccgtgcttcgcaga-gttgaataacgtat 224  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  143213 aactagttacaaacccgtgcttcgcacaggttgaataacgtat 143255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 8173 - 8213
Alignment:
Q  181 taaactagttacaaacccgtgcttcgca-gagttgaataac 220  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  8173 taaactagttacaaacccgtgcttcgcacgggttgaataac 8213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 3502 - 3558
Alignment:
Q  347 attttgttcatgagaccaggaaaacatcataataattaagatgaaactaattggaac 403  Q
    |||||||||| ||||  ||||||||| ||| |||||||| |||| ||||||||||||    
T  3502 attttgttcaagagattaggaaaacaacattataattaacatgatactaattggaac 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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