View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_low_17 (Length: 377)
Name: NF13075_low_17
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 38522870 - 38523227
Alignment:
| Q |
1 |
acctgaaaaatcaaccatttagaatgtcacgaaaaatagttttaactagataacaatgcacacaaaaattagtagtgcgacacagatgaatactcaataa |
100 |
Q |
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| T |
38522870 |
acctgaaaaatcaaccatttagaatgtcacaaaaaatagttttaactagataacaatgcacacaaaaattagtagtgcgacacagatgaatactcaataa |
38522969 |
T |
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| Q |
101 |
atggaaaatagtttcataaaactgtacctccttcaacatgtaaataattgaatcaaaatctgtcccccttgccaaagatcttgtagaagcagcctgaaca |
200 |
Q |
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| T |
38522970 |
atggaaaatagtttcataaaactgtacctccttcaacatgtaaataattgaatcaaaatctgtcccccttgccaaagatcttgtagaagcagcctgaaca |
38523069 |
T |
|
| Q |
201 |
gaaagacacatcagtttgagaatcattaaagacagtgataaattataataatatcagcattatagaaaataagaaagaatgaaattaacaaacctggata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38523070 |
gaaagacacatcagtttgagaatcattaaagacagtgataaattataataatatcagcattatagaaaataagaaagaatgaaattaacaaacctggata |
38523169 |
T |
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| Q |
301 |
acaggaccatctgccaaaggatccgagtatggaacaccaagctcaataatgtcagatc |
358 |
Q |
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| T |
38523170 |
acaggaccatctgccaaaggatccgagtatggaacaccaagctcaataatgtcagatc |
38523227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 41387259 - 41387191
Alignment:
| Q |
290 |
aaacctggataacaggaccatctgccaaaggatccgagtatggaacaccaagctcaataatgtcagatc |
358 |
Q |
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| T |
41387259 |
aaacctgaataacaggaccatctgccaaaggatcagaatatggaacgccaagctcaataatatcagatc |
41387191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 41387422 - 41387303
Alignment:
| Q |
99 |
aaatggaaaatagtttcataaaactgtacctccttcaacatgtaaataattgaatcaaaatctgtcccccttgccaaagatcttgtagaagcagcctgaa |
198 |
Q |
| |
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|||||| |||| |||||||| || | |||||| |||||||| |||||||||||||||||| |||||||||| |||| || ||||| ||||||||||| |
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| T |
41387422 |
aaatggcaaatggtttcatagaaat-tacctcattcaacatagaaataattgaatcaaaattgctcccccttgctaaagctcgtgtagcagcagcctgaa |
41387324 |
T |
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| Q |
199 |
cagaaagacacatcagtttga |
219 |
Q |
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| T |
41387323 |
cagaaagacatgtcagtttga |
41387303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 41388427 - 41388398
Alignment:
| Q |
39 |
gttttaactagataacaatgcacacaaaaa |
68 |
Q |
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| T |
41388427 |
gttttaactagataacaatgcacacaaaaa |
41388398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 3300914 - 3300997
Alignment:
| Q |
142 |
aaataattgaatcaaaatctgtccccctt-gccaaagatcttgtagaagcagcctgaacagaaagacacatcagtttgagaatca |
225 |
Q |
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|||||||||||||||||| ||||||||| || ||||||| ||||| |||| || || ||||||||||||||||||||||||||| |
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| T |
3300914 |
aaataattgaatcaaaattggtccccctttgctaaagatcgtgtagcagcatccgga-cagaaagacacatcagtttgagaatca |
3300997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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