View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_low_20 (Length: 351)
Name: NF13075_low_20
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 42204649 - 42204324
Alignment:
| Q |
11 |
cacagacaaatactcatcatttacattatgacgcacataaatttcagttccataaattctaaacaaatgagtttttactagagagtaaaaaacttgtaaa |
110 |
Q |
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| T |
42204649 |
cacagacaaatactcatcatttacattatgacgcacataaatttcagttccataaattctaaacaaatgagtttttactagagagtaaaaaacttgtaaa |
42204550 |
T |
|
| Q |
111 |
nnnnnnngacacagttacaagatcaggtcctattttaacctgcttctgatcccttagtgcccttgtttactacactgacatcagcccaaagaggagcatg |
210 |
Q |
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| T |
42204549 |
attttttgacacagttacaagatcaggtcctattttcacctgcctctgatcccttagtgcccttgtttactacactgacatcagcccaaagaggagcatg |
42204450 |
T |
|
| Q |
211 |
atcatcttgtaaaacattttcataaaagaaacttacttaaaattgtagagttggaattggaaattgcttcggacattgtgttgcttctggttctagatgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42204449 |
atcatcttgtaaaacattttcataaaagaaacttacttaaaattgtagagttggaattggaaattgcttctgacattgtgttgcttctggttctagatgt |
42204350 |
T |
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| Q |
311 |
ctctttggctccctctggataattgt |
336 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42204349 |
ctctttggctccctctggataattgt |
42204324 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 36865543 - 36865597
Alignment:
| Q |
198 |
aaagaggagcatgatcatcttgtaaaacattttcataaaagaaacttacttaaaat |
253 |
Q |
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||||||||| | ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
36865543 |
aaagaggagtaagatcatcttgtaaaacattttca-gaaagaaacttacttgaaat |
36865597 |
T |
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