View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13075_low_21 (Length: 337)

Name: NF13075_low_21
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13075_low_21
NF13075_low_21
[»] chr3 (5 HSPs)
chr3 (128-318)||(3095570-3095760)
chr3 (128-318)||(3081133-3081323)
chr3 (130-318)||(4547171-4547359)
chr3 (1-43)||(4547669-4547711)
chr3 (46-86)||(4547578-4547618)
[»] chr8 (7 HSPs)
chr8 (134-318)||(15696497-15696681)
chr8 (214-318)||(15721790-15721894)
chr8 (226-318)||(15703097-15703189)
chr8 (227-318)||(15692102-15692193)
chr8 (230-287)||(15763667-15763724)
chr8 (230-287)||(15804699-15804756)
chr8 (230-316)||(15799056-15799142)
[»] chr1 (1 HSPs)
chr1 (214-259)||(47593954-47593999)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 128 - 318
Target Start/End: Original strand, 3095570 - 3095760
Alignment:
Q  128 atatgcatgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat 227  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3095570 atatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat 3095669  T
Q  228 gcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3095670 gcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaat 3095760  T

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Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 128 - 318
Target Start/End: Original strand, 3081133 - 3081323
Alignment:
Q  128 atatgcatgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat 227  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3081133 atatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat 3081232  T
Q  228 gcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaat 318  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3081233 gcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaat 3081323  T

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Target: chr3; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 130 - 318
Target Start/End: Complemental strand, 4547359 - 4547171
Alignment:
Q  130 atgcatgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgc 229  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||  ||||||||||| || ||     
T  4547359 atgcatgcagagttggaatctttggtgtcaaggaaaaagtttggaactgttggatacaatactgaaaaatacatacataagcaatgaagttatgaagtgt 4547260  T
Q  230 atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaat 318  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  4547259 atacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaat 4547171  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4547711 - 4547669
Alignment:
Q  1 agtcttcttatatatgtgagtttttctcctttcatattagtta 43  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  4547711 agtcttcttatatatgtaagtttttctcctttcgtattagtta 4547669  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 4547618 - 4547578
Alignment:
Q  46 aattaatagggttaactatattattgatttctataaaattg 86  Q
    |||||| ||||||||||||| ||||||||||| ||||||||    
T  4547618 aattaacagggttaactataatattgatttctttaaaattg 4547578  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 134 - 318
Target Start/End: Complemental strand, 15696681 - 15696497
Alignment:
Q  134 atgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatac 233  Q
    ||||||| |||||| |||||||||||||||||||| |||||| |  |||||||||| |  |||||  ||||||    || ||| ||||| || |||||||    
T  15696681 atgcagacttggaagctttggtgtgaaggaaaaagcttggaattaatagatccaatccacaaaaaatcatacattgaaagtgaggttatgaagtgcatac 15696582  T
Q  234 acattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaat 318  Q
    |||||||||| |||||||||||| ||||||| |  ||| |||||||||||||||  || ||||  |||||||  |||||||||||    
T  15696581 acattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtgacacaat 15696497  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 318
Target Start/End: Complemental strand, 15721894 - 15721790
Alignment:
Q  214 tgaagttattaaatgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgac 313  Q
    |||||| || |||||||||||||| ||||| ||||||||||||||||||||||  ||| ||||||| |||||||  |||||||| |||||||  ||||||    
T  15721894 tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgac 15721795  T
Q  314 acaat 318  Q
    |||||    
T  15721794 acaat 15721790  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 318
Target Start/End: Complemental strand, 15703189 - 15703097
Alignment:
Q  226 atgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaat 318  Q
    ||||||||||| |||||| |||||  |||||||||||||||  ||| |||||||||||||||  || ||| | ||||||| ||||||||||||    
T  15703189 atgcatacacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcatgctaggaagtgacacaat 15703097  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 15692193 - 15692102
Alignment:
Q  227 tgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaat 318  Q
    |||||| |||| ||| | |||||||| ||||||||||| |  ||||||||||||||||| | ||||||||||||| | || |||||||||||    
T  15692193 tgcataaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaat 15692102  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 15763724 - 15763667
Alignment:
Q  230 atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtcca 287  Q
    |||||||||||||| ||||||||||||||||||||||  ||| |||||||||| ||||    
T  15763724 atacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttcca 15763667  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 15804756 - 15804699
Alignment:
Q  230 atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtcca 287  Q
    ||||||||||||||  | |||||||||||||||||||  ||| |||||||||||||||    
T  15804756 atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtcca 15804699  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 15799142 - 15799056
Alignment:
Q  230 atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacaca 316  Q
    ||||||||||||||  | |||||||||||||||||||  ||| ||||||| |||||||  ||||||   |||||||  |||||||||    
T  15799142 atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtccaccgttgttcgcatgctagggagtgacaca 15799056  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 47593954 - 47593999
Alignment:
Q  214 tgaagttattaaatgcatacacattggtttgttgtgtgtacaagaa 259  Q
    |||||||||||| |||||||| ||||||||||| ||||| ||||||    
T  47593954 tgaagttattaagtgcatacagattggtttgttatgtgttcaagaa 47593999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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