View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13075_low_24 (Length: 321)

Name: NF13075_low_24
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13075_low_24
NF13075_low_24
[»] chr4 (21 HSPs)
chr4 (18-88)||(5817486-5817556)
chr4 (22-88)||(45996004-45996070)
chr4 (18-88)||(51579326-51579396)
chr4 (18-88)||(24059239-24059309)
chr4 (18-88)||(25784014-25784084)
chr4 (24-88)||(17044009-17044073)
chr4 (24-88)||(25164583-25164647)
chr4 (24-88)||(37605803-37605867)
chr4 (24-88)||(55281214-55281278)
chr4 (18-88)||(20107116-20107187)
chr4 (29-88)||(32290220-32290279)
chr4 (18-88)||(41277221-41277291)
chr4 (24-88)||(32525134-32525198)
chr4 (24-88)||(43749098-43749162)
chr4 (29-88)||(3287090-3287149)
chr4 (18-88)||(42179243-42179313)
chr4 (18-80)||(51579594-51579656)
chr4 (18-88)||(36851233-36851303)
chr4 (18-88)||(48525332-48525402)
chr4 (18-88)||(50498216-50498286)
chr4 (45-88)||(39631271-39631314)
[»] chr3 (17 HSPs)
chr3 (18-88)||(23004762-23004832)
chr3 (24-88)||(9271116-9271180)
chr3 (24-88)||(33288138-33288202)
chr3 (24-88)||(38247804-38247868)
chr3 (24-88)||(50989209-50989273)
chr3 (24-88)||(51092341-51092405)
chr3 (18-88)||(8330698-8330768)
chr3 (24-88)||(46135533-46135597)
chr3 (24-90)||(8496710-8496776)
chr3 (24-88)||(12224115-12224179)
chr3 (24-88)||(48034921-48034985)
chr3 (18-86)||(54713532-54713600)
chr3 (18-88)||(36674625-36674695)
chr3 (18-88)||(39947263-39947333)
chr3 (43-88)||(29915090-29915135)
chr3 (43-88)||(29964243-29964288)
chr3 (25-86)||(54413511-54413572)
[»] chr8 (21 HSPs)
chr8 (18-88)||(2599537-2599607)
chr8 (24-86)||(8368483-8368545)
chr8 (18-88)||(41075703-41075773)
chr8 (18-88)||(31774730-31774800)
chr8 (24-88)||(16465724-16465788)
chr8 (18-88)||(10391411-10391481)
chr8 (18-88)||(28898001-28898071)
chr8 (24-88)||(1993752-1993816)
chr8 (24-88)||(43066016-43066080)
chr8 (24-88)||(45413650-45413714)
chr8 (18-88)||(11904859-11904929)
chr8 (35-88)||(14342312-14342365)
chr8 (18-72)||(27497194-27497248)
chr8 (37-88)||(4077086-4077137)
chr8 (25-88)||(44081073-44081136)
chr8 (19-88)||(35200562-35200631)
chr8 (28-88)||(12142087-12142147)
chr8 (18-60)||(10592010-10592052)
chr8 (53-86)||(44077642-44077675)
chr8 (48-88)||(31523648-31523688)
chr8 (18-86)||(45502670-45502738)
[»] chr1 (23 HSPs)
chr1 (22-88)||(2403035-2403101)
chr1 (18-88)||(46845762-46845832)
chr1 (24-88)||(29637322-29637386)
chr1 (18-88)||(527005-527075)
chr1 (35-88)||(1673375-1673428)
chr1 (24-88)||(1994959-1995023)
chr1 (24-88)||(6487734-6487798)
chr1 (18-88)||(39858353-39858423)
chr1 (35-88)||(27325751-27325804)
chr1 (35-88)||(44797589-44797642)
chr1 (24-88)||(26040976-26041040)
chr1 (24-88)||(7178223-7178287)
chr1 (24-88)||(32267577-32267641)
chr1 (24-88)||(49430576-49430640)
chr1 (21-88)||(33502633-33502700)
chr1 (18-88)||(13276570-13276640)
chr1 (18-88)||(29731194-29731264)
chr1 (18-87)||(19989246-19989315)
chr1 (28-88)||(15225107-15225167)
chr1 (42-88)||(40030844-40030890)
chr1 (26-88)||(40294845-40294907)
chr1 (18-88)||(40314098-40314168)
chr1 (18-88)||(47571669-47571739)
[»] chr6 (9 HSPs)
chr6 (18-88)||(23915978-23916048)
chr6 (24-88)||(14314098-14314162)
chr6 (22-88)||(9045839-9045905)
chr6 (24-88)||(29429590-29429654)
chr6 (24-88)||(34792763-34792827)
chr6 (18-86)||(9521921-9521991)
chr6 (35-88)||(1244679-1244732)
chr6 (18-88)||(12748217-12748287)
chr6 (40-88)||(16717996-16718044)
[»] chr5 (12 HSPs)
chr5 (18-88)||(15285335-15285405)
chr5 (24-88)||(13988253-13988317)
chr5 (24-88)||(36890383-36890447)
chr5 (18-88)||(43100314-43100384)
chr5 (18-88)||(35906000-35906070)
chr5 (33-88)||(8378350-8378405)
chr5 (29-88)||(11247198-11247257)
chr5 (18-88)||(12248279-12248349)
chr5 (18-88)||(33687653-33687723)
chr5 (18-88)||(6043012-6043080)
chr5 (25-88)||(20151390-20151453)
chr5 (18-72)||(1447853-1447907)
[»] chr2 (17 HSPs)
chr2 (18-88)||(3121616-3121686)
chr2 (23-88)||(14945847-14945912)
chr2 (24-88)||(13697077-13697141)
chr2 (23-88)||(14242626-14242691)
chr2 (18-86)||(25333152-25333220)
chr2 (24-88)||(36272773-36272837)
chr2 (29-88)||(36709308-36709367)
chr2 (18-88)||(24475807-24475877)
chr2 (18-88)||(33299985-33300055)
chr2 (24-88)||(32599360-32599424)
chr2 (24-88)||(40095269-40095333)
chr2 (18-88)||(4434696-4434766)
chr2 (22-88)||(23860274-23860340)
chr2 (18-88)||(40216415-40216485)
chr2 (35-88)||(17823585-17823638)
chr2 (24-88)||(33555475-33555539)
chr2 (24-88)||(42061343-42061407)
[»] chr7 (11 HSPs)
chr7 (24-88)||(31741049-31741113)
chr7 (20-88)||(42974486-42974554)
chr7 (18-88)||(38349565-38349635)
chr7 (35-88)||(46576365-46576418)
chr7 (21-87)||(11752604-11752670)
chr7 (18-88)||(28713683-28713753)
chr7 (18-88)||(38755001-38755071)
chr7 (24-88)||(47480125-47480188)
chr7 (24-88)||(48460665-48460729)
chr7 (24-87)||(33496506-33496569)
chr7 (19-88)||(37536422-37536491)
[»] scaffold0933 (1 HSPs)
scaffold0933 (24-88)||(3165-3230)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 5817486 - 5817556
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5817486 acatggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatca 5817556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 45996004 - 45996070
Alignment:
Q  22 gaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45996004 gaacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatca 45996070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 51579396 - 51579326
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  51579396 acatggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 51579326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 24059239 - 24059309
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||    
T  24059239 acatggacacatgtcacaattgtatgtgggtgtacaaatgatacatgccatctaaggtggtctatgtatca 24059309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 25784014 - 25784084
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  25784014 acatgaatacatgtcacaattatgtgtggatgtacaagtggtacatgccacctaagatgatctatgtatca 25784084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 17044073 - 17044009
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  17044073 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 17044009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 25164583 - 25164647
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  25164583 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 25164647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 37605803 - 37605867
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  37605803 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 37605867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 55281278 - 55281214
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  55281278 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 55281214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 20107187 - 20107116
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtggg-tgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||    
T  20107187 acatggacacatgtcacaattgtgtgcggggtgtacaagtggtacatgccacctaaggtggtctatgtatca 20107116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 32290279 - 32290220
Alignment:
Q  29 tgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||    
T  32290279 tgtcacaattgtgtatgggtgtataagtggtacatgccacctaagatggtctatgtatca 32290220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 41277291 - 41277221
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| || ||||| || |||||||||||    
T  41277291 acatgaacacatgtcacaattgtatgtgggtgtacaggtggtacatgtcacctaaggtgatctatgtatca 41277221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 32525134 - 32525198
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||| |||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||    
T  32525134 acacatatcacaattgtgtgtggatgtataagtggtatatgccacctaagatggtctatgtatca 32525198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 43749162 - 43749098
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  43749162 acacttgtcaaaattatgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 43749098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 3287149 - 3287090
Alignment:
Q  29 tgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  3287149 tgtcaaaattgtgtgtgggtgtacaagtggtacataccatctaaggtggtttatgtatca 3287090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 42179243 - 42179313
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||  |||||||| ||||||||||| ||| ||||| ||||||||||||||    
T  42179243 acatggacacatgtcacaattgtgcatgggtgtataagtggtacataccacctaaggtggtctatgtatca 42179313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 51579656 - 51579594
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtct 80  Q
    ||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||    
T  51579656 acatggacacatgtcacaattgtatttgggtgtacaagtggtacatgccacctaaggtggtct 51579594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 36851303 - 36851233
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||  || |||||||||||||||||||||||||  |||| ||||||||| ||||    
T  36851303 acatggacacatgtcacaatcatgcgtgggtgtacaagtggtacatgccacttaaggtggtctatgcatca 36851233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 48525402 - 48525332
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||| | ||||| ||||||||||||| |||||| ||||  |||| |||||||||    
T  48525402 acatgaacacatgtcacaattatatgtggatgtacaagtggtatatgccacctaaagtggtttatgtatca 48525332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 50498286 - 50498216
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||| | | ||||| || |||||||||||    
T  50498286 acatggacacatgtcacaattgtgtatgggtgtataagtggtacatactacctaaggtgatctatgtatca 50498216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 39631271 - 39631314
Alignment:
Q  45 gggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  39631271 gggtgtacaagtggtacatgccacctaaggtggtctatgtatca 39631314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 23004832 - 23004762
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  23004832 acatgaatacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 23004762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 9271180 - 9271116
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9271180 acacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaaggtggtctatgtatca 9271116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 33288202 - 33288138
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  33288202 acacatatcacaattgtgtgtgggtgtacaagtggtacataccacctaaggtggtctatgtatca 33288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 38247868 - 38247804
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  38247868 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 38247804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 50989273 - 50989209
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  50989273 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 50989209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 51092405 - 51092341
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  51092405 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 51092341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 8330698 - 8330768
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||| || |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  8330698 acatggacatatatcacaattgtgtgtgaatgtacaagtggtacatgccatctaaggtggtctatgtatca 8330768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 46135597 - 46135533
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||| ||| ||||||||| || |||||||||| |||||||||||||||||||    
T  46135597 acacatgtcacaattgtatgtaggtgtacaaatgatacatgccatttaagatggtctatgtatca 46135533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 8496776 - 8496710
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatcaat 90  Q
    |||| ||||| |||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  8496776 acacttgtcaaaattgtatgtgggtggacaagtggtacatgccacctaaggtggtctatgtatcaat 8496710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 12224115 - 12224179
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||||||||||||||||||| |||||||||||| ||||| |||| |||||||||    
T  12224115 acacttgtcaaaattgtgtgtgggtgtacaaatggtacatgccacctaaggtggtttatgtatca 12224179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 48034921 - 48034985
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||||| ||||||||||||||||||||||| || ||||| |||| |||||||||    
T  48034921 acacttgtcaaaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtttatgtatca 48034985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 54713600 - 54713532
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 86  Q
    ||||| |||||||||| |||| ||||||| ||| |||||||||||||||| ||||  ||||||||||||    
T  54713600 acatggacacatgtcataattatgtgtggatgttcaagtggtacatgccacctaacgtggtctatgtat 54713532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 36674625 - 36674695
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | |||| |||||||||||||| ||| || ||||| |||| |||||||||    
T  36674625 acatggacacatgtcacaattatatgtgagtgtacaagtggtatatgtcacctaaggtggtttatgtatca 36674695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 39947263 - 39947333
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| |||||| |||||||||| |||||||||| |||||||||||| ||  |||| |||||||| |||||    
T  39947263 acatggacacatatcacaattgtatgtgggtgtataagtggtacatgtcacttaaggtggtctatatatca 39947333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 29915090 - 29915135
Alignment:
Q  43 gtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||||||||||||||| ||||||  |||| ||||||||||||||    
T  29915090 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatca 29915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 29964243 - 29964288
Alignment:
Q  43 gtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||||||||||||||| ||||||  |||| ||||||||||||||    
T  29964243 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatca 29964288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 54413511 - 54413572
Alignment:
Q  25 cacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 86  Q
    |||||||| |||||||||||||||||||||||| ||  || ||  |||| ||||||||||||    
T  54413511 cacatgtcgcaattgtgtgtgggtgtacaagtgttagttgtcagttaaggtggtctatgtat 54413572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 2599607 - 2599537
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  2599607 acatgaacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatca 2599537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 8368483 - 8368545
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 86  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  8368483 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtat 8368545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 41075703 - 41075773
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||    
T  41075703 acatgaacacatgtcacaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatca 41075773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 31774800 - 31774730
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| || ||||| ||||||||||||||    
T  31774800 acatgaacacatgtcacaattgtatgtgagtgtacaagtggtacatgtcacctaaggtggtctatgtatca 31774730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 16465724 - 16465788
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  16465724 acacatgtcacaattgtatgtgggtatacaagtggtacatgccgtctaaggtggtctatgtatca 16465788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 10391411 - 10391481
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| |||||||| |||||| |||||||| |||||||| |||||||||||    
T  10391411 acatggacacatgtcacaattgtgtatgggtgtataagtggcacatgccacctaagatgatctatgtatca 10391481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 28898071 - 28898001
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| |||||||| |||||||| |||||| ||||| ||||||||||||||    
T  28898071 acatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatca 28898001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 1993752 - 1993816
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  1993752 acacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatca 1993816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 43066016 - 43066080
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  43066016 acacttgtcaaaattgtgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatca 43066080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 45413650 - 45413714
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||| ||||| ||||||||||||||    
T  45413650 acacatgtcacaattgtgtatggatgtataagtggtacatgccacctaaggtggtctatgtatca 45413714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 11904929 - 11904859
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  11904929 acatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 11904859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 14342312 - 14342365
Alignment:
Q  35 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  14342312 aattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatca 14342365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 27497248 - 27497194
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaa 72  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||    
T  27497248 acatgaacacatgtcgcaattgtctgtggatgtacaagtggtacatgccacctaa 27497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 4077086 - 4077137
Alignment:
Q  37 ttgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||||||||| |||||||||||||||||| ||||| |||||||| |||||    
T  4077086 ttgtgtgtgggtatacaagtggtacatgccacctaaggtggtctatatatca 4077137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 44081136 - 44081073
Alignment:
Q  25 cacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||  |||||| ||||||| || ||||||||||||||| |||| |||||||||    
T  44081136 cacatgtcacaattacgtgtggatgtacaaatgatacatgccatctaaggtggtgtatgtatca 44081073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 35200631 - 35200562
Alignment:
Q  19 catgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||||||||||||| | |||||||||||||||  || |||||| ||||| |||| |||||||||    
T  35200631 catggacacatgtcacaattatatgtgggtgtacaagtaatatatgccacctaaggtggtttatgtatca 35200562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 12142147 - 12142087
Alignment:
Q  28 atgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||| | ||||| ||||||||||||| |||||| ||||| |||| |||||||||    
T  12142147 atgtcacaattatatgtggatgtacaagtggtatatgccacctaaggtggtttatgtatca 12142087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 10592052 - 10592010
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggta 60  Q
    ||||| ||||||||||||||| | |||||||||||||||||||    
T  10592052 acatggacacatgtcacaattatatgtgggtgtacaagtggta 10592010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 44077675 - 44077642
Alignment:
Q  53 aagtggtacatgccatctaagatggtctatgtat 86  Q
    |||||||||||||||||||||||| |||||||||    
T  44077675 aagtggtacatgccatctaagatgatctatgtat 44077642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 31523648 - 31523688
Alignment:
Q  48 tgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||||||| |||||| ||||||||||||||||| |||||    
T  31523648 tgtacaagtgatacatgtcatctaagatggtctatctatca 31523688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 45502738 - 45502670
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 86  Q
    ||||| ||||||||||||||||| | ||  |||||||||||||||| |||  |||| |||| |||||||    
T  45502738 acatggacacatgtcacaattgtatatgaatgtacaagtggtacataccacttaaggtggtttatgtat 45502670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 2403035 - 2403101
Alignment:
Q  22 gaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403035 gaacacttttcaaaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 2403101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 46845762 - 46845832
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||    
T  46845762 acatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaaggtggtctatgtatca 46845832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 29637322 - 29637386
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29637322 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatca 29637386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 527005 - 527075
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  527005 acatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatca 527075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 1673428 - 1673375
Alignment:
Q  35 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1673428 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatca 1673375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 1995023 - 1994959
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  1995023 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 1994959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 6487798 - 6487734
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||||    
T  6487798 acacatgtcacaattgtgtgtggatgtacaagtggtacatgccacctaaattggtctatgtatca 6487734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 39858423 - 39858353
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| |||||||| |||||||| |||||| ||||| ||||||||||||||    
T  39858423 acatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatca 39858353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 27325751 - 27325804
Alignment:
Q  35 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27325751 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 27325804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 44797589 - 44797642
Alignment:
Q  35 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  44797589 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 44797642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 26041040 - 26040976
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| | |||||||    
T  26041040 acacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtttgtgtatca 26040976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 7178223 - 7178287
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| |||||||||||| ||||||||||||| ||||||||| || ||||| ||||||||||||||    
T  7178223 acacttgtcacaattgtatgtgggtgtacaaatggtacatgtcacctaaggtggtctatgtatca 7178287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 32267577 - 32267641
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||||||||||||||||||| | ||||||||||  |||||||||||||||||||    
T  32267577 acacttgtcaaaattgtgtgtgggtgtacaaattgtacatgccacttaagatggtctatgtatca 32267641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 49430576 - 49430640
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||| | | |||| ||||||||||||||| ||||| ||||||||||||||    
T  49430576 acacatgtcacaattgtgtattgatgtataagtggtacatgccacctaaggtggtctatgtatca 49430640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 33502633 - 33502700
Alignment:
Q  21 tgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||| ||||||||||||  ||| ||||||||||||||||||| |||||||  ||||||||||||||    
T  33502633 tgaacatatgtcacaattgcatgtaggtgtacaagtggtacatgtcatctaatgtggtctatgtatca 33502700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 13276570 - 13276640
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| |||||||||| |||||||| || ||||| ||||||||||| ||| ||||| ||||||||||||||    
T  13276570 acatggacacatgtcataattgtgtatgagtgtataagtggtacataccacctaaggtggtctatgtatca 13276640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 29731264 - 29731194
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | ||||||||||| ||||||| |||||| ||||| |||| |||||||||    
T  29731264 acatggacacatgtcacaattatatgtgggtgtactagtggtatatgccacctaaggtggtttatgtatca 29731194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 19989315 - 19989246
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatc 87  Q
    ||||| |||||||||||| |||| ||||| ||||||||||||| ||| |||||||| |||| ||||||||    
T  19989315 acatggacacatgtcacacttgtatgtggatgtacaagtggtatatgtcatctaaggtggtttatgtatc 19989246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 15225107 - 15225167
Alignment:
Q  28 atgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||  |||||||||| |||| |||||||||| ||||| ||||||||||||||    
T  15225107 atgtcacaattgcatgtgggtgtataagttgtacatgccacctaaggtggtctatgtatca 15225167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 40030890 - 40030844
Alignment:
Q  42 tgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||    
T  40030890 tgtgggtgtacaagtggtacatgctacctaaggtggtctatgtatca 40030844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 40294845 - 40294907
Alignment:
Q  26 acatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||| | |||| ||||||||||| ||||| ||||  ||||||||||||||    
T  40294845 acatgtcacaattgtgtataggtggacaagtggtacgtgccacctaaagtggtctatgtatca 40294907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 40314168 - 40314098
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| ||| |||| || |||||||| | | ||||| |||| |||||||||    
T  40314168 acatggacacatgtcacaattgtgtatggatgtataaatggtacatactacctaaggtggtttatgtatca 40314098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 47571669 - 47571739
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | ||||||||||||||||| | ||| || ||||| |||| ||| |||||    
T  47571669 acatggacacatgtcacaattatatgtgggtgtacaagtggcatatgtcacctaaggtggtttatatatca 47571739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 23916048 - 23915978
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||    
T  23916048 acatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaaggtgatctatgtatca 23915978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 14314098 - 14314162
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  14314098 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 14314162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 9045905 - 9045839
Alignment:
Q  22 gaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  9045905 gaacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatca 9045839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 29429654 - 29429590
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||| |||||||    
T  29429654 acacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtagtctgtgtatca 29429590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 34792763 - 34792827
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||| | |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  34792763 acacttgtcaaaattatatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 34792827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 9521921 - 9521991
Alignment:
Q  18 acatgaacacatgtcacaatt--gtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 86  Q
    ||||||| | |||||||||||  ||||||||||||||||||||||||||||| ||||| || |||||||||    
T  9521921 acatgaatatatgtcacaattatgtgtgtgggtgtacaagtggtacatgccacctaaggtgatctatgtat 9521991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 1244679 - 1244732
Alignment:
Q  35 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||||||||| ||||||||||||||||||||  |||| ||||||||||||||    
T  1244679 aattgtgtgtggatgtacaagtggtacatgccacttaaggtggtctatgtatca 1244732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 12748287 - 12748217
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||| ||||||||||| | ||||||||||||||||||| |||||| ||||  |||| |||||||||    
T  12748287 acatggacagatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaagtggtttatgtatca 12748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 16718044 - 16717996
Alignment:
Q  40 tgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  16718044 tgtgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 16717996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 15285405 - 15285335
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||    
T  15285405 acatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatca 15285335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 13988317 - 13988253
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  13988317 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 13988253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 36890447 - 36890383
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  36890447 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 36890383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 43100314 - 43100384
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| || ||| |||||||||| |||||||||    
T  43100314 acatggacacatgtcacaattatatgtgggtgtacaagtggtatataccacctaagatggtttatgtatca 43100384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 35906070 - 35906000
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||| | |||||||| ||||| ||||| ||| ||||| ||||||||||||||    
T  35906070 acatggacacatgtcacaattgtatatgggtgtataagtgatacataccacctaaggtggtctatgtatca 35906000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 8378405 - 8378350
Alignment:
Q  33 acaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||||||| ||||||| ||||||||| |||||||| ||||||||||||||    
T  8378405 acaactgtgtgtggatgtacaaatggtacatgtcatctaaggtggtctatgtatca 8378350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 11247257 - 11247198
Alignment:
Q  29 tgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| |||||||||||| ||||||||| ||| |||||||||||| | ||||||||||||    
T  11247257 tgtcaaaattgtgtgtggatgtacaagtagtatatgccatctaaggtagtctatgtatca 11247198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 12248349 - 12248279
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | ||||| ||||||||||||| |||||| ||||| || | |||||||||    
T  12248349 acatggacacatgtcacaattatatgtggatgtacaagtggtatatgccacctaaggtgatttatgtatca 12248279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 33687723 - 33687653
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | | ||| ||||||||||||| |||||| |||||||| | |||||||||    
T  33687723 acatggacacatgtcacaattatatatggatgtacaagtggtatatgccacctaagatgatttatgtatca 33687653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 6043080 - 6043012
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||| |  |||||||| || |||||||||    
T  6043080 acatgaacatatgtcacaattatatatgggtgtacaagtggtacatac--tctaagattgtttatgtatca 6043012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 20151453 - 20151390
Alignment:
Q  25 cacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||| |||| ||||||||||| ||||||||| |||| | ||||  ||||||||||||||    
T  20151453 cacatgtcataattatgtgtgggtgttcaagtggtatatgctacctaaagtggtctatgtatca 20151390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 1447853 - 1447907
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaa 72  Q
    ||||| ||| |||||||||||||| |||| |||| ||||||||||||||| ||||    
T  1447853 acatggacatatgtcacaattgtgcgtggatgtataagtggtacatgccacctaa 1447907  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 3121686 - 3121616
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||    
T  3121686 acatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatca 3121616  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 14945847 - 14945912
Alignment:
Q  23 aacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  14945847 aacacatgttacatttgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 14945912  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 13697077 - 13697141
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  13697077 acacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 13697141  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 14242626 - 14242691
Alignment:
Q  23 aacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  14242626 aacacttgtcaaaattgtgtgtgggtgtacaggtggtacataccacctaagatggtctatgtatca 14242691  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 25333220 - 25333152
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtat 86  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||| ||| ||| ||||||||||||    
T  25333220 acatgaacacatgtcacaaatgtgtgttgatgtacaagtggtacatgcgatccaaggtggtctatgtat 25333152  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 36272773 - 36272837
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  36272773 acacttgtcaaaattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatca 36272837  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 36709308 - 36709367
Alignment:
Q  29 tgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  36709308 tgtcaaaattgtgtgtgggtgtataagtggtacataccacctaagatggtctatgtatca 36709367  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 24475807 - 24475877
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||||||| |||||||| ||||| ||||| ||| ||||| ||||||||||||||    
T  24475807 acatggacacatgtcacaattgtgtatgggtgtataagtgatacataccacctaaggtggtctatgtatca 24475877  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 33300055 - 33299985
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||| | |||||||| || ||||||||||||  |||| ||||||||||||||    
T  33300055 acatgaacacatgtcacaattgtatatgggtgtataaatggtacatgccacttaaggtggtctatgtatca 33299985  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 32599360 - 32599424
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  32599360 acacttgtcaaaattatgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatca 32599424  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 40095333 - 40095269
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  40095333 acacttgtcaaaattgtatgtggatgtacaagtggtacatgtcatctaaggtggtctatgtatca 40095269  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 4434696 - 4434766
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| |||||||||||||| ||||||||  |||||||||||||||||||  |||| |||||||| |||||    
T  4434696 acatggacacatgtcacaatagtgtgtggaagtacaagtggtacatgccacataaggtggtctatatatca 4434766  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 23860274 - 23860340
Alignment:
Q  22 gaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||| ||||| ||| ||||||| || |||||||||||||||||| ||||| ||||||||||||||    
T  23860274 gaacacttgtcaaaatagtgtgtgagtatacaagtggtacatgccacctaaggtggtctatgtatca 23860340  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 40216485 - 40216415
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| ||  |||||||| |||| ||| |||||    
T  40216485 acatggacacatgtcacaattatatgtgggtgtacaagtggtatatatcatctaaggtggtttatatatca 40216415  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 17823638 - 17823585
Alignment:
Q  35 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||||| |||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  17823638 aattgtatgtgggtgtacaagtgatacataccatctaaggtggtttatgtatca 17823585  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 33555475 - 33555539
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| ||||||||||  |||||||||||||||||||||  |||| || |||||||||||    
T  33555475 acacttgtcaaaattgtgtgtaagtgtacaagtggtacatgccacttaaggtgatctatgtatca 33555539  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 42061343 - 42061407
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||||| |||||||||||||||||||||||||| | ||  || |||||||||||    
T  42061343 acacttgtcaaaattgtatgtgggtgtacaagtggtacatgccacccaaagtgctctatgtatca 42061407  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 31741113 - 31741049
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  31741113 acacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatca 31741049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 42974486 - 42974554
Alignment:
Q  20 atgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||| |||||||||    
T  42974486 atgaacacatgtcacaattgtatgtgggtgtataagtggtacatgccacctaaggtggtttatgtatca 42974554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 38349565 - 38349635
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| |||||| |||||||||| |||||||||    
T  38349565 acatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaagatggtttatgtatca 38349635  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 46576365 - 46576418
Alignment:
Q  35 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  46576365 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 46576418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 11752670 - 11752604
Alignment:
Q  21 tgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatc 87  Q
    |||||||||||||||||| | ||| |||||||||||| ||||||||| ||||| |||||||||||||    
T  11752670 tgaacacatgtcacaattatatgtaggtgtacaagtgatacatgccacctaaggtggtctatgtatc 11752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 28713753 - 28713683
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  28713753 acatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatca 28713683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 38755001 - 38755071
Alignment:
Q  18 acatgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||| |||||||||| |||| ||| ||||||| |||||||||||||||| ||||| ||||||||||||||    
T  38755001 acatggacacatgtcataattatgtatgggtgttcaagtggtacatgccacctaaggtggtctatgtatca 38755071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 47480125 - 47480188
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    ||||||||||||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||||    
T  47480125 acacatgtcacaattgtat-tgggtgtacaaatggtacatgccacctaaggtggtctatgtatca 47480188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 48460729 - 48460665
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||| |||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||    
T  48460729 acacttgtcaaaattgtatgtggatgtacaaatggtacatgccacctaaggtggtctatgtatca 48460665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 33496569 - 33496506
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatc 87  Q
    |||| ||||| |||| | ||||||||||||||||||||||| || ||||| |||||||||||||    
T  33496569 acacttgtcaaaattatatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatc 33496506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 37536422 - 37536491
Alignment:
Q  19 catgaacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatca 88  Q
    |||| ||||||||||||||| | |||||||||||| ||| || |||||| |||||||| | |||||||||    
T  37536422 catggacacatgtcacaattatatgtgggtgtacatgtgatatatgccacctaagatgatttatgtatca 37536491  T

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Target: scaffold0933 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 3165 - 3230
Alignment:
Q  24 acacatgtcacaattgtgtgtgggtgtacaagtggtacatgccatctaagatggtc-tatgtatca 88  Q
    |||| ||||| |||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  3165 acacttgtcaaaattgtatgtgggtgtacaaatggtacatgtcatctaagatggtcttatgtatca 3230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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