View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_low_31 (Length: 238)
Name: NF13075_low_31
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 29199942 - 29200097
Alignment:
| Q |
80 |
tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggnnnnnnnngcatactattttccctagattgcg |
179 |
Q |
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| T |
29199942 |
tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggtttttttgcatactaatttccctagattgtg |
29200041 |
T |
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| Q |
180 |
tgattatggaaggttaaacctgaaatcagaatgacaaggtcctgatacattgattt |
235 |
Q |
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| T |
29200042 |
tgattatgaaaggttaaacctgaaatgagaatgacaaggtcctgatacattgattt |
29200097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 19768427 - 19768562
Alignment:
| Q |
77 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggnnnnnnnngcatactattttccctagatt |
176 |
Q |
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| T |
19768427 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggtttttttgcatactattttccctagatt |
19768526 |
T |
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| Q |
177 |
gcgtgattatggaaggttaaacctgaaatcagaatg |
212 |
Q |
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| T |
19768527 |
gtttgattatggaaggttaaacttgaaatgagaatg |
19768562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 37616860 - 37616725
Alignment:
| Q |
77 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggnnnnnnnngcatactattttccctagatt |
176 |
Q |
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| T |
37616860 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggtttttttgcatactattttccctagatt |
37616761 |
T |
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| Q |
177 |
gcgtgattatggaaggttaaacctgaaatcagaatg |
212 |
Q |
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| T |
37616760 |
gtgtgattatggaaggttaaacttgaaatgagaatg |
37616725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 25899478 - 25899395
Alignment:
| Q |
156 |
gcatactattttccctagattgcgtgattatggaaggttaaacctgaaatcagaat-gacaaggtcctgatacattgatttgct |
238 |
Q |
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| T |
25899478 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatgggcaaggtcctgatacattgatttgct |
25899395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 51389526 - 51389463
Alignment:
| Q |
77 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct |
140 |
Q |
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| T |
51389526 |
ctctttctaaaacttctttgtttgatctttttatggatttgcatttgcgagaatttaagcccct |
51389463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 770534 - 770592
Alignment:
| Q |
82 |
tctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct |
140 |
Q |
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| T |
770534 |
tctaaaacttctttgtttggcctttttatggatttgcatttgcgagaatttaagcccct |
770592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 32663200 - 32663270
Alignment:
| Q |
160 |
actattttccctagattgcgtgattatggaaggttaaacctgaaatcagaatgacaaggtcctgatacatt |
230 |
Q |
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| T |
32663200 |
actattttccctggattgtgtgataaaggaaggttaagcctgaattgagaatggcaggttcctgatacatt |
32663270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 8028252 - 8028212
Alignment:
| Q |
190 |
aggttaaacctgaaatcagaatgacaaggtcctgatacatt |
230 |
Q |
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| T |
8028252 |
aggttaaacctgaaaggagaatggcaaggtcctgatacatt |
8028212 |
T |
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