View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_low_32 (Length: 236)
Name: NF13075_low_32
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8719558 - 8719337
Alignment:
| Q |
1 |
tttacatgtttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctgg |
100 |
Q |
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| T |
8719558 |
tttacatgtttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctgg |
8719459 |
T |
|
| Q |
101 |
aggaagagtttggttagcacatagcatttcaaactttctagattaattcatcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtac |
200 |
Q |
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| T |
8719458 |
aggaagagtttggttagcacatagcatttcaaactttctagattaattcatcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtac |
8719359 |
T |
|
| Q |
201 |
ctttgacttttgagcagaaact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
8719358 |
ctttgacttttgagcagaaact |
8719337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8673265 - 8673043
Alignment:
| Q |
1 |
tttacatgtttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctgg |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673265 |
tttacatgtttgagtctcactaacttctttgttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctgg |
8673166 |
T |
|
| Q |
101 |
aggaagagtttggttagcacatagcatttcaaactttctagattaat----tcatcatgtgattcattatttacaagaatcttaatcaattacaggtgta |
196 |
Q |
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| T |
8673165 |
atgaagagtttggttagcacatagcatttcaaactttctagattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgta |
8673066 |
T |
|
| Q |
197 |
gtacctttgacttttgagcagaa |
219 |
Q |
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||||||| ||||||||||||||| |
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| T |
8673065 |
gtaccttggacttttgagcagaa |
8673043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 8591714 - 8591500
Alignment:
| Q |
9 |
tttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagag |
108 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
8591714 |
tttgagtctcactaacttctttgttgcttaggttattcatcctattcatgaccaatgtttttatttgacttttgaccataagaagaagctggagaaagaa |
8591615 |
T |
|
| Q |
109 |
tttggttagcacatagcatttcaaactttctagattaattcatcatgtgattcattatttacaagaatc-ttaatcaattacaggtgtagtacctttgac |
207 |
Q |
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| T |
8591614 |
tttggttagcacgtagcatttcaaactttctagcttaatgcatcatacaattagttatttacatgaatctttaatcaattacaggtgtagtacctttgac |
8591515 |
T |
|
| Q |
208 |
ttttgagcagaaact |
222 |
Q |
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||||||||||||||| |
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| T |
8591514 |
ttttgagcagaaact |
8591500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 23439629 - 23439848
Alignment:
| Q |
1 |
tttacatgtttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23439629 |
tttacatgtttgagtctcactaacttcttttttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcat---aagaagctga |
23439725 |
T |
|
| Q |
101 |
aggaagagtttggttagcacatagcatttcaaactttctagattaat----tcatcatgtgattcattatttacaagaatcttaatcaattacaggtgta |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
23439726 |
aggaagagtttggttagcacatagcatttcaaactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgta |
23439825 |
T |
|
| Q |
197 |
gtacctttgacttttgagcagaa |
219 |
Q |
| |
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|| |||| ||||||||||||||| |
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| T |
23439826 |
gttccttggacttttgagcagaa |
23439848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 55410343 - 55410251
Alignment:
| Q |
25 |
ttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttag |
117 |
Q |
| |
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||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| || |||| |||||||||||| |
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| T |
55410343 |
ttctttgttggttaggttgtacatccaattcatgaccaatgtttttatttgactttggagcacaagaataagttgaaggaggagtttggttag |
55410251 |
T |
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