View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13075_low_33 (Length: 232)

Name: NF13075_low_33
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13075_low_33
NF13075_low_33
[»] chr1 (13 HSPs)
chr1 (9-130)||(13244130-13244251)
chr1 (135-213)||(13244450-13244528)
chr1 (129-215)||(13080788-13080874)
chr1 (61-130)||(12963575-12963644)
chr1 (127-183)||(19279089-19279145)
chr1 (56-123)||(19278827-19278894)
chr1 (128-215)||(12963797-12963884)
chr1 (134-193)||(13094604-13094663)
chr1 (134-193)||(13130033-13130092)
chr1 (134-183)||(13161736-13161785)
chr1 (132-215)||(13086290-13086373)
chr1 (134-193)||(13101205-13101264)
chr1 (135-215)||(13271769-13271849)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 13244130 - 13244251
Alignment:
Q  9 agaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaa 108  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13244130 agaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaag 13244229  T
Q  109 gaaggattgggaaagagggaaa 130  Q
    ||| ||||||||||| ||||||    
T  13244230 gaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 13244450 - 13244528
Alignment:
Q  135 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtg 13244528  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 13080788 - 13080874
Alignment:
Q  129 aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtg 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| || | |||||||||||||||||||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtg 13080874  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  61 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 130  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 19279089 - 19279145
Alignment:
Q  127 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggct 183  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggct 19279145  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  56 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 123  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 12963797 - 12963884
Alignment:
Q  128 aaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtg 215  Q
    |||| |||||||||||||||||| ||||||||||| || |||||| | |||||||| | ||||||| |  ||||| | ||||||||||    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtg 12963884  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 13094663 - 13094604
Alignment:
Q  134 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 193  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||||    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13094604  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 13130092 - 13130033
Alignment:
Q  134 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 193  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||||    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13130033  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 13161785 - 13161736
Alignment:
Q  134 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggct 183  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggct 13161736  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 13086373 - 13086290
Alignment:
Q  132 agcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtg 215  Q
    ||||| |||| || || |||||||||||||| ||||||||| | || ||||| | ||||||| |  ||||||||||||||||||    
T  13086373 agcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtg 13086290  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 13101264 - 13101205
Alignment:
Q  134 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 193  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| ||||| | |||||||    
T  13101264 cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcct 13101205  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 13271849 - 13271769
Alignment:
Q  135 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtg 215  Q
    ||||||||||  |||||||||||| ||| |||||||||||||| || || | ||||||| |  ||||| | ||||||||||    
T  13271849 ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtg 13271769  T

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