View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_low_34 (Length: 227)
Name: NF13075_low_34
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_low_34 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 34784745 - 34784540
Alignment:
| Q |
5 |
gctttgatactaacatgtcaacactaataataatttaaaatatgaaagtgattgtaggtaagcaaatgtggacactaaacacgtctaaattaatgtgtcg |
104 |
Q |
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| T |
34784745 |
gctttgatactaacatatcgacactaataataatttaaaatatgaaagtgcttgtacgtaagcaaatgt-----------acgtctaaattaatgtgtcg |
34784657 |
T |
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| Q |
105 |
gtattaacaattgatgaagatacataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcattt |
204 |
Q |
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| T |
34784656 |
gtattaacaattgatgaacatacataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaagttcaaattttcattt |
34784557 |
T |
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| Q |
205 |
ccagttaagttaccaac |
221 |
Q |
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| T |
34784556 |
ccagttaagttaccaac |
34784540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 34776440 - 34776328
Alignment:
| Q |
109 |
taacaattgatgaagatacataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccag |
208 |
Q |
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| T |
34776440 |
taacaattgttgaacatgcataccttaagtaaaacagcatcagcagaagggatagatttgaacatatctccaccaacaaagttcaaattttcatttccag |
34776341 |
T |
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| Q |
209 |
ttaagttaccaac |
221 |
Q |
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| T |
34776340 |
ttaagttaccaac |
34776328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 11548057 - 11547978
Alignment:
| Q |
129 |
taccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccag |
208 |
Q |
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| T |
11548057 |
taccttgagtaaaacagcatctgcaggagggatagatttgaacatatctccaccaacaaatttcaaattttcatctccag |
11547978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 11468020 - 11468110
Alignment:
| Q |
126 |
acataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccagttaagtta |
216 |
Q |
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| T |
11468020 |
acataccttgagtaaaacagcatctgcaggagggattgatttgaacatatctccaccaacaaagttcaaattttgagttccagataagtta |
11468110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 11523441 - 11523351
Alignment:
| Q |
126 |
acataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccagttaagtta |
216 |
Q |
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| T |
11523441 |
acataccttgagtaaaacagcatctgcaggagggattgatttgaacatatctccaccaacaaagttcaaattttgagttccagataagtta |
11523351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 11445033 - 11445112
Alignment:
| Q |
129 |
taccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccag |
208 |
Q |
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| T |
11445033 |
taccttgagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccag |
11445112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 11507829 - 11507747
Alignment:
| Q |
126 |
acataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccag |
208 |
Q |
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| T |
11507829 |
acataccttaagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccag |
11507747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 2476 - 2404
Alignment:
| Q |
136 |
agtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccag |
208 |
Q |
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| T |
2476 |
agtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccag |
2404 |
T |
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