View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13075_low_6 (Length: 542)
Name: NF13075_low_6
Description: NF13075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13075_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 9567456 - 9567968
Alignment:
| Q |
18 |
agcctgtctctatgattctccatgctcacgctctcgtccggtatgtgatgcaaagcaaaaggaaaattcacaacaagaacttcatcatgttgaacttcaa |
117 |
Q |
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| T |
9567456 |
agcctgtctctatgattctccatgctcacgctctcgtccggtatgtgatgcaaagcaaaaggaaaattcacaacaagaacttcatcatgttgaacttcaa |
9567555 |
T |
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| Q |
118 |
aatcttccagttgaacctcacatccatacattttaacactattgaactcaaatggaactttacaagtttttgcacaatcttctagcttttttcctacaat |
217 |
Q |
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| T |
9567556 |
aatcttccagttgaacctcacatccatacattttaacactattgaactcaaatggaactttacaagtttttgcacaatcttctagcttttttcctacaat |
9567655 |
T |
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| Q |
218 |
atcaagttttccacctctagcatgaaacgattgcgagtcatcgatacctgttacacgaatgaacggaggtccgccgggtttatgcttgagagcatgcaaa |
317 |
Q |
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| T |
9567656 |
atcaagttttccacctctagcatgaaacgattgcgagtcatcgatacctgttacacgaatgaacggaggtccgccgggtttatgcttgagagcatgcaaa |
9567755 |
T |
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| Q |
318 |
agtaacatccactgtgatccttgtgcaatttggaagtcaattatgtgaattcttgattcatttttcatttcttcacaaatgacagcattggatgatatat |
417 |
Q |
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| T |
9567756 |
agtaacatccactgtgatccttgtgcaatttggaagtcaattatgtgaattcttgattcattttgcatttcttcacaaatgacagcattggatgatatat |
9567855 |
T |
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| Q |
418 |
aagcaaactgaaaatatgggcaaatctgatacaaaatgtgcatagcacttatcaactctatgcttgttggttcttcacatttcaaggctttataaattgc |
517 |
Q |
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| T |
9567856 |
aagcaaactgaaaatatgggcaaatctgatacaaaatgtgcatagcactcatcaactctatgcttgttggttcttcacatttcaaggctttataaattgc |
9567955 |
T |
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| Q |
518 |
actccctgatgat |
530 |
Q |
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| T |
9567956 |
actccctgatgat |
9567968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 330 - 502
Target Start/End: Original strand, 55913614 - 55913786
Alignment:
| Q |
330 |
tgtgatccttgtgcaatttggaagtcaattatgtgaattcttgattcatttttcatttcttcacaaatgacagcattggatgatatataagcaaactgaa |
429 |
Q |
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|||| ||| ||||| |||||||| |||||||| ||||| || ||||||||| |||| ||||| |||| |||||||| | ||||| || ||||||| || |
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| T |
55913614 |
tgtgttccctgtgcgatttggaaatcaattatatgaatcctggattcatttgccattgcttcagaaataacagcatttgcagatatgtatgcaaacttaa |
55913713 |
T |
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| Q |
430 |
aatatgggcaaatctgatacaaaatgtgcatagcacttatcaactctatgcttgttggttcttcacatttcaa |
502 |
Q |
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| T |
55913714 |
aatatggacaaatctgatacagcatgtgcatgtaagtcattagctctttgctcgttggttgttcacatttcaa |
55913786 |
T |
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