View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13076_high_12 (Length: 429)

Name: NF13076_high_12
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13076_high_12
NF13076_high_12
[»] chr3 (2 HSPs)
chr3 (13-340)||(42648464-42648798)
chr3 (377-416)||(42648428-42648467)
[»] chr2 (2 HSPs)
chr2 (308-352)||(7139693-7139737)
chr2 (373-417)||(10002387-10002431)
[»] chr4 (1 HSPs)
chr4 (358-416)||(25318997-25319055)
[»] chr5 (2 HSPs)
chr5 (376-417)||(10898671-10898712)
chr5 (377-413)||(8121490-8121526)
[»] chr6 (1 HSPs)
chr6 (308-340)||(30926801-30926833)
[»] chr1 (1 HSPs)
chr1 (361-401)||(37734052-37734092)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 42648798 - 42648464
Alignment:
Q  13 cacagattttccatatacctccattcctttggtgaaaacagcgactcacttcctaagtaatcttttacactccaacgccctgcctggatggtctgcaagg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42648798 cacagattttccatatacctccattcctttggtgaaaacagcgactcacttcctaagtaatcttttacactccaacgccctgcctggatagtctgcaagg 42648699  T
Q  113 ctccaccacaacaatacaaattcagtcaaattcaacataaatttacctaatagattaccagtgtgtttgattctgccatcacaaaaattgatttggtaaa 212  Q
    | |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42648698 ccccaccacagcaatacagattcagtcaaattcaacataaatttacctactagattaccagtgtgtttgattctgccatcacaaaaattgatttggtaaa 42648599  T
Q  213 ---------annnnnnnatttggtaaaattgattccgactaaaagtgactaaaatgcaaattatttatgtttagatacctaaaagtaaaaatgagttgaa 303  Q
                     ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42648598 tttttttatttatttttatttggtaaaattgattccgactaaa--tgactaaaatgcaaattatttatgtttagatacctaaaagtaaaaatgagttgaa 42648501  T
Q  304 caagatttgattgtaaaaatcaattctagaataaaaa 340  Q
    |||||||||||||||||||||||||||||||||||||    
T  42648500 caagatttgattgtaaaaatcaattctagaataaaaa 42648464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 416
Target Start/End: Complemental strand, 42648467 - 42648428
Alignment:
Q  377 aaaatcaattttactccagaacaaccaaatatgtcaaaat 416  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  42648467 aaaatcaattttactccagaacaatcaaatatgtcaaaat 42648428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 7139737 - 7139693
Alignment:
Q  308 atttgattgtaaaaatcaattctagaataaaaactttaatttcta 352  Q
    |||||||||||||||||||||||||||| ||| || |||||||||    
T  7139737 atttgattgtaaaaatcaattctagaatcaaagctataatttcta 7139693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 10002387 - 10002431
Alignment:
Q  373 aaacaaaatcaattttactccagaacaaccaaatatgtcaaaatt 417  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||    
T  10002387 aaacaaaatcaattttattcaagaacaaccaaatatatcaaaatt 10002431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 25319055 - 25318997
Alignment:
Q  358 tagaatcaaatctgaaaacaaaatcaattttactccagaacaaccaaatatgtcaaaat 416  Q
    ||||||||| |||| | |||||||||||| ||||| ||| |||||||| ||||||||||    
T  25319055 tagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtcaaaat 25318997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Complemental strand, 10898712 - 10898671
Alignment:
Q  376 caaaatcaattttactccagaacaaccaaatatgtcaaaatt 417  Q
    ||||||||||||||||| ||| |||||||| |||||||||||    
T  10898712 caaaatcaattttactcgagagcaaccaaacatgtcaaaatt 10898671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 8121526 - 8121490
Alignment:
Q  377 aaaatcaattttactccagaacaaccaaatatgtcaa 413  Q
    |||||||||||||||| |||| |||||||||||||||    
T  8121526 aaaatcaattttactctagaagaaccaaatatgtcaa 8121490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 30926801 - 30926833
Alignment:
Q  308 atttgattgtaaaaatcaattctagaataaaaa 340  Q
    |||||| ||||||||||||||||||||||||||    
T  30926801 atttgagtgtaaaaatcaattctagaataaaaa 30926833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Original strand, 37734052 - 37734092
Alignment:
Q  361 aatcaaatctgaaaacaaaatcaattttactccagaacaac 401  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
T  37734052 aatcaaatctgaaaacaaaatcaattatactcaagaccaac 37734092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University