View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13076_high_14 (Length: 417)
Name: NF13076_high_14
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 11087808 - 11087407
Alignment:
| Q |
1 |
tccccatttaacttggagaataattatgatgcaccgtcaatgtaaaacgttttgtactatcaaccaatcacaaacgatcattagtttataata-attata |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11087808 |
tccccatttaacttggagaataattatgatgcaccgtcaatgtaaaacgttttgtactatcaaccaatcacaaacgatcattagtttataatagattata |
11087709 |
T |
|
| Q |
100 |
aactaaaaatcgttaatgatataatgcttatgattgattgataatgtaaaaaatctatacattgtctatcctaaattaaattattgatagatctaagtat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11087708 |
aactaaaaatcgttaatgatataatgcttatgattgattgataatgtaaaaaatttatacattgtctatcctaaattaaattattgatagatctaagtat |
11087609 |
T |
|
| Q |
200 |
aatatttgcttcttttcataagtccattctttgcaaatttcatgataacgcattttaagtgatgcacactcaaaaacgttgaaattaattctttttaatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11087608 |
aatatttgcttcttttcataagtccattctttgcaaatttcatgataacgcattttaagtgatgcacactcaaaaacgttgaaattaattctttttaatt |
11087509 |
T |
|
| Q |
300 |
cttttcaatcagttagtttcaacacaattgcatctaggcacatgcgcatgtacaaagtgtttctttgccttgttgtgaactcacattctttttgggtttt |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11087508 |
cctttcaatcagttagtttcaacacaattgcatctaggcacatgcacatgtacaaagtgtttctttgccttgttgtgaactcacattctttttgggtttt |
11087409 |
T |
|
| Q |
400 |
ca |
401 |
Q |
| |
|
|| |
|
|
| T |
11087408 |
ca |
11087407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University