View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13076_high_16 (Length: 398)

Name: NF13076_high_16
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13076_high_16
NF13076_high_16
[»] chr8 (2 HSPs)
chr8 (173-372)||(38543433-38543629)
chr8 (10-73)||(38543729-38543792)
[»] chr7 (1 HSPs)
chr7 (328-367)||(32548652-32548691)
[»] chr5 (3 HSPs)
chr5 (188-261)||(26712217-26712293)
chr5 (188-261)||(26981955-26982031)
chr5 (329-367)||(32943547-32943585)
[»] chr4 (2 HSPs)
chr4 (328-367)||(33370854-33370893)
chr4 (329-367)||(33369939-33369977)
[»] chr3 (1 HSPs)
chr3 (348-376)||(51492456-51492484)
[»] chr1 (1 HSPs)
chr1 (331-367)||(31788258-31788294)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 173 - 372
Target Start/End: Complemental strand, 38543629 - 38543433
Alignment:
Q  173 ctgaattatagatgatgaagagttttttatttctgtaattgttgaattttaattttgtgagttgaagattgaatgtgaaatggcattgaacgagagagac 272  Q
    ||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38543629 ctgaattataggtgatgaag--ttttttatttctgtaattgttgaattttaattttgtgagttgaagattgaatgtgaaatgacattgaacgagagagac 38543532  T
Q  273 aatgttagaagatgatggaaaaataatctaatattgacgatacacaataagacagttgatctaatggttagcattaactttcccatggtgggaaaatctt 372  Q
      ||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||  ||||||||||||||| ||||||||||||| ||||    
T  38543531 ggtgttagaagataatggaaaaataatctagtattgacggtacacaataagacaattgatctaagagttagcattaacttt-ccatggtgggaaattctt 38543433  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 38543792 - 38543729
Alignment:
Q  10 aagaatatgctttatgtgaatgttgttgtttccagattaataacataccagtatcattagctgg 73  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  38543792 aagaatatgctttatgtgaatgttgttctttccagattaataacatcccaatatcattagctgg 38543729  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 367
Target Start/End: Original strand, 32548652 - 32548691
Alignment:
Q  328 ttgatctaatggttagcattaactttcccatggtgggaaa 367  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  32548652 ttgatctaatggctaacattaactttcccatggtgggaaa 32548691  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 26712217 - 26712293
Alignment:
Q  188 tgaagagttttttatttctgtaattg-----ttgaattttaattttgtgagttgaagattgaatgtgaaatggcattga 261  Q
    |||||||||||| |||||||||||||     |||| |||||||| ||  ||||||||||||||||||| ||||||||||    
T  26712217 tgaagagtttttaatttctgtaattgaattgttgagttttaattctg--agttgaagattgaatgtgacatggcattga 26712293  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 26981955 - 26982031
Alignment:
Q  188 tgaagagttttttatttctgtaattg-----ttgaattttaattttgtgagttgaagattgaatgtgaaatggcattga 261  Q
    |||||||||||| |||||||||||||     |||| |||||||| ||  ||||||||||||||||||| ||||||||||    
T  26981955 tgaagagtttttaatttctgtaattgaattgttgagttttaattctg--agttgaagattgaatgtgacatggcattga 26982031  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 32943585 - 32943547
Alignment:
Q  329 tgatctaatggttagcattaactttcccatggtgggaaa 367  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  32943585 tgatctaatggctaacattaactttcccatggtgggaaa 32943547  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 367
Target Start/End: Original strand, 33370854 - 33370893
Alignment:
Q  328 ttgatctaatggttagcattaactttcccatggtgggaaa 367  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  33370854 ttgatctaatggctaacattaactttcccatggtgggaaa 33370893  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 33369977 - 33369939
Alignment:
Q  329 tgatctaatggttagcattaactttcccatggtgggaaa 367  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  33369977 tgatctaatggctaacattaactttcccatggtgggaaa 33369939  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 376
Target Start/End: Original strand, 51492456 - 51492484
Alignment:
Q  348 aactttcccatggtgggaaaatctttctc 376  Q
    |||||||||||||||||||||||||||||    
T  51492456 aactttcccatggtgggaaaatctttctc 51492484  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 31788258 - 31788294
Alignment:
Q  331 atctaatggttagcattaactttcccatggtgggaaa 367  Q
    ||||||||||||  |||||||||||||||||||||||    
T  31788258 atctaatggttaaaattaactttcccatggtgggaaa 31788294  T

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