View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_high_19 (Length: 379)
Name: NF13076_high_19
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 3 - 349
Target Start/End: Complemental strand, 6129938 - 6129602
Alignment:
| Q |
3 |
cgagaagaacaatgggtcaacggcggcacgacgggcaagagattgtatggcgatcatcgtcaagcgtggtcggagagatggcggtcgtcgtcaaatgtgg |
102 |
Q |
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| T |
6129938 |
cgagaagaacaatgggtcaacggcggcacgacgggcaagagattgtatggcggtcatcgtcaagcatggtcggagagatggcggtcgtcgtcaaatgtgg |
6129839 |
T |
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| Q |
103 |
ttggggaggcgcacatgactttttcgctcctcccatcatccgaatccctttacgactaaagtgaatcaaatcgtttttatattgtttggagaaatcaaat |
202 |
Q |
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| T |
6129838 |
ttggggaggcgcacatgacttcttcactcctcccatcatctgaatccctttacgactaaagtgaatcaaatcgtttttatattgtttggagaaatcaaat |
6129739 |
T |
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| Q |
203 |
taaacaagaaatttttgatgaagaagaagaattgtttacaatcaaattaaacagacgcaatatgttcctgctcaagtgaactcaaattttgtgaatgagc |
302 |
Q |
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| T |
6129738 |
taaacaagaaatttgtgatgaagaagaagaattgtttacaatcaaattaaacagatgcaatatgttcctgc----------tcaaattttttgaatgagc |
6129649 |
T |
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| Q |
303 |
ttgggattcaaaccttctggagatattgtgaatgagctttggattca |
349 |
Q |
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| T |
6129648 |
ttgggattcaaaccttctggagatattgtgaatgagctttggattca |
6129602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 129 - 349
Target Start/End: Complemental strand, 21193358 - 21193148
Alignment:
| Q |
129 |
ctcctcccatcatccgaatccctttacgactaaagtgaatcaaatcgtttttatattgtttggagaaatcaaattaaacaagaaatttttgatgaagaag |
228 |
Q |
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| T |
21193358 |
ctcctcccatcatctgaatccctttacgactaaagtgaatcaaatcgtttttatattgtttggagaaatcaaattaaacaagaaatttgtgatgaagaag |
21193259 |
T |
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| Q |
229 |
aagaattgtttacaatcaaattaaacagacgcaatatgttcctgctcaagtgaactcaaattttgtgaatgagcttgggattcaaaccttctggagatat |
328 |
Q |
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| T |
21193258 |
aagaattgtttacaatcaaattaaacagacgcaatatgttcctgc----------tcaaattttttgaatgagcttgggattcaaaccttctggagatat |
21193169 |
T |
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| Q |
329 |
tgtgaatgagctttggattca |
349 |
Q |
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| T |
21193168 |
tgtgaatgagctttggattca |
21193148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 21193426 - 21193372
Alignment:
| Q |
42 |
agattgtatggcgatcatcgtcaagcgtggtcggagagatggcggtcgtcgtcaa |
96 |
Q |
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| T |
21193426 |
agattgtatggcggtcgtcgtcaagcatggtcggagagatggcggtcgtcgtcaa |
21193372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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