View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_high_21 (Length: 366)
Name: NF13076_high_21
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_high_21 |
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| [»] scaffold0060 (2 HSPs) |
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| [»] scaffold1769 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 69161 - 69496
Alignment:
| Q |
12 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattggaaggtatgagttggtcttcaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
69161 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattggaaggtatgagttggtcttgaga |
69260 |
T |
|
| Q |
112 |
ttttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagaggataaacttttccggaaagtggaatttcaacttat |
211 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
69261 |
ttttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagaggataaacttttctggaaagtggaatttcaacttat |
69360 |
T |
|
| Q |
212 |
catgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaatgcaatttgccaactgttagg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
69361 |
catgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaatgcaattttccaactgttagg |
69460 |
T |
|
| Q |
312 |
cgcaaaatatggtataattcatgtaaagaggcgtaa |
347 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||| |
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| T |
69461 |
cgcaaaatatggtataatccatggaaagaggcgtaa |
69496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 65306 - 65443
Alignment:
| Q |
97 |
gagttggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagagg------ataaacttttccg |
190 |
Q |
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|||||||| || | |||||||||| |||||| |||||||||||| |||| |||| ||||||||||||| |||||||||||| ||||||||| | |
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| T |
65306 |
gagttggttttgagattttgaaatatagcatgttaggcactctacaatttaagacagttgaaagaataaacttgatagaggttaagaataaacttt--ca |
65403 |
T |
|
| Q |
191 |
gaaagtggaatttcaacttatcatgttaattttgttttgg |
230 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| |
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| T |
65404 |
aaaactggaatttcaacttatcatgttaattttgttttgg |
65443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 8442813 - 8442457
Alignment:
| Q |
1 |
gaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtga----------tgctaaatttagcagcattgga |
90 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8442813 |
gaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgaatattagtgatgctaaatttagcagcattgga |
8442714 |
T |
|
| Q |
91 |
aggtatgagttggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagaggataaacttttccg |
190 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8442713 |
aggtatgagttggtcttcagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagaggataaacttttccg |
8442614 |
T |
|
| Q |
191 |
gaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8442613 |
gaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaa |
8442514 |
T |
|
| Q |
291 |
tgcaatttgccaactgttaggcgcaaaatatggtataattcatgtaaagaggcgtaa |
347 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
8442513 |
tgcaatttgccgactgttaagcgcaaaatatggtataatccatgtaaagaggcgtaa |
8442457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 274
Target Start/End: Original strand, 7915473 - 7915665
Alignment:
| Q |
86 |
ttggaaggtatgagttggtcttcaaattttgaaatttagcattttaggcactctaga--attgaagatagttgaaagaatagacttgatagaggataa-- |
181 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||| || |||||||| | ||| |||| | ||||||| ||| |||||||||||| ||| |
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|
| T |
7915473 |
ttggaaggtatgagttggtcttgagattttgaaatttagcatgttctgcactctatacaattcaagacaattgaaaggatacacttgatagaggttaaga |
7915572 |
T |
|
| Q |
182 |
--acttttccggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttga |
274 |
Q |
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| ||| |||||||| |||| |||| |||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |
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| T |
7915573 |
ataaatttaa--aaagtggactttctacttttcatattaattatgttttggggcattctataagtttaaagggatttttgaaataacatggttga |
7915665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8348643 - 8348555
Alignment:
| Q |
1 |
gaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattgg |
89 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
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| T |
8348643 |
gaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg |
8348555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 94 - 317
Target Start/End: Complemental strand, 8364505 - 8364280
Alignment:
| Q |
94 |
tatgagttggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagagg------ataaactttt |
187 |
Q |
| |
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|||||||||||||| | ||||||||||||||||| || ||||||||| |||| || ||||||||||||| |||||||||||| ||||||||| |
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| T |
8364505 |
tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaatt--cgacagttgaaagaatacacttgatagaggttaagaataaacttt- |
8364409 |
T |
|
| Q |
188 |
ccggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagt |
287 |
Q |
| |
|
| ||| ||||| |||||||||||||||| |||||||| ||| |||| || |||||| |||| | ||| | |||||||||| ||| || || ||||| |
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|
| T |
8364408 |
-caaaaactggaacttcaacttatcatgtttattttgttatggagcattctgtaagttaaaagcgactttgggaataacttggctgaactattggaaagt |
8364310 |
T |
|
| Q |
288 |
gaatgcaatttgccaactgttaggcgcaaa |
317 |
Q |
| |
|
||| ||||||||||| || |||||| |||| |
|
|
| T |
8364309 |
gaacgcaatttgccaccttttaggcacaaa |
8364280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 7915312 - 7915374
Alignment:
| Q |
30 |
tgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattggaag |
92 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
7915312 |
tgtttagtacaaaatcatgccaaataccggctatagcgatgctaaatttagcagcattggaag |
7915374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 8348494 - 8348331
Alignment:
| Q |
94 |
tatgagttggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagagg------ataaactttt |
187 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||| || || |||||| |||| ||| ||||||||||||| |||||| ||||| |||||| ||| |
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|
| T |
8348494 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattcgagacagttgaaagaatacacttgaaagaggttacgaataaac-ttt |
8348396 |
T |
|
| Q |
188 |
ccggaaagtggaatttcaact--tatcatgttaattttgttttggggcatcctataagtttaaag |
250 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||| |
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|
| T |
8348395 |
caaaaatgtggaatttcaacttatatcaggttaattttgttttggggcattctataagttaaaag |
8348331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 8409891 - 8409801
Alignment:
| Q |
1 |
gaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattggaag |
92 |
Q |
| |
|
|||||||| |||||| ||| |||||| |||||||||||||| || | |||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
8409891 |
gaagaaattgccagtggtctgtgatacgctgtttagtacaaag-gaagccaaataccggctatagcgatgctaaatttagcagcattggaag |
8409801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 230 - 575
Alignment:
| Q |
12 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagt----------gatgctaaatttagcagcattggaaggtatgagtt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
230 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgaatattagtgatgctaaatttagcagcattggaaggtatgagtt |
329 |
T |
|
| Q |
102 |
ggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagaggataaacttttccggaaagtggaat |
201 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
330 |
ggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagaggataaacttttcaggaaagtggaat |
429 |
T |
|
| Q |
202 |
ttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaatgcaatttgcc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
430 |
ttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaatgcaatttgcc |
529 |
T |
|
| Q |
302 |
aactgttaggcgcaaaatatggtataattcatgtaaagaggcgtaa |
347 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
530 |
gactgttaagcgcaaaatatggtataatccatggaaagaggcgtaa |
575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 44460350 - 44460390
Alignment:
| Q |
15 |
tgttctatgatacactgtttagtacaaaatgatgtcaaata |
55 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
44460350 |
tgttccatgatacactatttagtacaaaatgttgtcaaata |
44460390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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