View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_high_22 (Length: 360)
Name: NF13076_high_22
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 110 - 345
Target Start/End: Original strand, 38092649 - 38092884
Alignment:
| Q |
110 |
tgagttacttgaaccgtgtttggatggcagcaaccgtggctgtggcacaaggccacactgatccaatccataagtgcaaatcagctcttgcaactattca |
209 |
Q |
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| T |
38092649 |
tgagttacatgaaccgtgtttggatggcagcaaccatggctgtggcacaaggccacactgaaccaatccataactgcaaatcagctctgggaactattca |
38092748 |
T |
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| Q |
210 |
ccaaaaccggactcgtctcttctccgccggtggtgctttgttggcaatcttcccggtttccagcatcgttgtatcggaagcaaccgtcattagttctgag |
309 |
Q |
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| T |
38092749 |
ccaaaaccgaactcgtctcttctccgccggaggtgctttgtcggcactcttgccgttgtccagcgtctttgtatcggaagcaaccgtcgtgagttctgag |
38092848 |
T |
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| Q |
310 |
gcgaaagagaagttgagacaaaccgatgattctctt |
345 |
Q |
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| T |
38092849 |
ccaaaaaagaagttgagacaaaccgatgattctctt |
38092884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 110 - 344
Target Start/End: Original strand, 38089666 - 38089897
Alignment:
| Q |
110 |
tgagttacttgaaccgtgtttggatggcagcaaccgtggctgtggcacaaggccacactgatccaatccataagtgcaaatcagctcttgcaactattca |
209 |
Q |
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| T |
38089666 |
tgagttatttgaaccgtgtttggatggcagcaacagtggcggtggcacaaggccacactgatccaatctataagtgcaaaacagctcttggaactattca |
38089765 |
T |
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| Q |
210 |
ccaaaaccggactcgtctcttctccgccggtggtgctttgttggcaatcttcccggtttccagcatcgttgtatcggaagcaaccgtcattagttctgag |
309 |
Q |
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| T |
38089766 |
ccaaaaccgaactcgtctcttctctgcgggcggtgctttgtcggcactcttgccactgtccagcgtcgttgtatcggacgcaaccg---tgagttctaag |
38089862 |
T |
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| Q |
310 |
gcgaaagagaagttgagacaaaccgatgattctct |
344 |
Q |
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| T |
38089863 |
gttgaagagaagctgagacaaaccgatgattctct |
38089897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 38095929 - 38096058
Alignment:
| Q |
110 |
tgagttacttgaaccgtgtttggatggcagcaaccgtggctgtggcacaaggccacactgatccaatccataagtgcaaatcagctcttgcaactattca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| ||| ||||||||| |||| | | | ||||||| |
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| T |
38095929 |
tgagttacttgaaccgtgtttggatggcagcaaccgtagcggtggcgcaaggccacaccgatccaggccacaagtgcaaaacagccgtcggatctattca |
38096028 |
T |
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| Q |
210 |
ccaaaaccggactcgtctcttctccgccgg |
239 |
Q |
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| T |
38096029 |
ccagaaccgaactcgtctcttctccgccgg |
38096058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38092536 - 38092604
Alignment:
| Q |
1 |
attcctttataaatacctcattcctcttatcatgtaactcatcaaacactttcctactgtttgttaggc |
69 |
Q |
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| T |
38092536 |
attccattataaatacctcatttctcttatcagctaactcatcaaacactttcctactgttttttaggc |
38092604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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