View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13076_high_24 (Length: 344)

Name: NF13076_high_24
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13076_high_24
NF13076_high_24
[»] chr6 (5 HSPs)
chr6 (19-322)||(10033221-10033524)
chr6 (184-214)||(28486757-28486787)
chr6 (181-215)||(28907210-28907244)
chr6 (184-214)||(29799170-29799200)
chr6 (184-223)||(7942335-7942375)
[»] chr7 (5 HSPs)
chr7 (25-137)||(33269449-33269561)
chr7 (184-222)||(46550747-46550785)
chr7 (192-226)||(6518731-6518765)
chr7 (186-223)||(10893311-10893348)
chr7 (186-222)||(28070450-28070486)
[»] chr8 (2 HSPs)
chr8 (188-221)||(27219862-27219895)
chr8 (185-222)||(11203072-11203109)
[»] chr5 (3 HSPs)
chr5 (253-294)||(29200797-29200838)
chr5 (185-231)||(30923293-30923339)
chr5 (258-294)||(39828486-39828522)
[»] chr4 (2 HSPs)
chr4 (253-286)||(12651062-12651095)
chr4 (184-220)||(39765593-39765629)
[»] chr1 (1 HSPs)
chr1 (184-237)||(8204054-8204107)
[»] chr2 (1 HSPs)
chr2 (187-223)||(11777365-11777401)


Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 10033524 - 10033221
Alignment:
Q  19 ctagagcctactgtaattgatgaaattagatctggtccttatagacaactttttcatccagaacagttaattactggcaaagaagatgctgctaataatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033524 ctagagcctactgtaattgatgaaattagatctggtccttatagacaactttttcatccagaacagttaattactggcaaagaagatgctgctaataatt 10033425  T
Q  119 ttgcaagaggacattacacaggtcagtcaactcttatcatatgctgaaattaatttggtatattttagcaccaacacttctgatcgaaggtgtgtctggt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10033424 ttgcaagaggacattacacaggtcagtcaactcttatcatatgctgaaataaatttggtatattttagcaccaacacttttgatcgaaggtgtgtctggt 10033325  T
Q  219 gtccggcatatgttagtgtacaacattgacacagaacgacaccaacacatgtgattactttcaattatttcatattattaacggtcttttgtccggtatc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  10033324 gtccggcatatgttagtgtacaacattgacacagaacgacaccaacacatgtgattactttcaattatttcatattactaatggtcttttgtccggtatc 10033225  T
Q  319 tgtg 322  Q
    ||||    
T  10033224 tgtg 10033221  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 28486757 - 28486787
Alignment:
Q  184 tagcaccaacacttctgatcgaaggtgtgtc 214  Q
    |||||||||||||||||||||||||||||||    
T  28486757 tagcaccaacacttctgatcgaaggtgtgtc 28486787  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 28907244 - 28907210
Alignment:
Q  181 ttttagcaccaacacttctgatcgaaggtgtgtct 215  Q
    ||||||||||||||||| |||||||||||||||||    
T  28907244 ttttagcaccaacacttatgatcgaaggtgtgtct 28907210  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 29799170 - 29799200
Alignment:
Q  184 tagcaccaacacttctgatcgaaggtgtgtc 214  Q
    |||||||||||||||||||||||||||||||    
T  29799170 tagcaccaacacttctgatcgaaggtgtgtc 29799200  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 7942375 - 7942335
Alignment:
Q  184 tagcaccaacacttctgatcgaaggtgtgtc-tggtgtccg 223  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  7942375 tagcaccaacacttctgatctaaggtgtgtcgtggtgtccg 7942335  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 33269449 - 33269561
Alignment:
Q  25 cctactgtaattgatgaaattagatctggtccttatagacaactttttcatccagaacagttaattactggcaaagaagatgctgctaataattttgcaa 124  Q
    |||||||| || |||||| | ||| ||||| |||| |||||||||||||| || || || |||||| ||||||| |||||||| ||||||||||||||||    
T  33269449 cctactgttatcgatgaagtaagaactggttcttacagacaactttttcaccctgagcaattaatttctggcaaggaagatgccgctaataattttgcaa 33269548  T
Q  125 gaggacattacac 137  Q
    | ||||| |||||    
T  33269549 ggggacactacac 33269561  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 46550747 - 46550785
Alignment:
Q  184 tagcaccaacacttctgatcgaaggtgtgtctggtgtcc 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  46550747 tagcaccaacacttatgatcgaaggtgtgtctggtgtcc 46550785  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 6518765 - 6518731
Alignment:
Q  192 acacttctgatcgaaggtgtgtctggtgtccggca 226  Q
    |||||||||||||||||||||| ||||||||||||    
T  6518765 acacttctgatcgaaggtgtgtttggtgtccggca 6518731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 10893311 - 10893348
Alignment:
Q  186 gcaccaacacttctgatcgaaggtgtgtctggtgtccg 223  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  10893311 gcaccaacacttctgattgaaggcgtgtctggtgtccg 10893348  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 28070450 - 28070486
Alignment:
Q  186 gcaccaacacttctgatcgaaggtgtgtctggtgtcc 222  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  28070450 gcaccaacacttatgatctaaggtgtgtctggtgtcc 28070486  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 27219895 - 27219862
Alignment:
Q  188 accaacacttctgatcgaaggtgtgtctggtgtc 221  Q
    ||||||||||||||||||||||||||||||||||    
T  27219895 accaacacttctgatcgaaggtgtgtctggtgtc 27219862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 11203109 - 11203072
Alignment:
Q  185 agcaccaacacttctgatcgaaggtgtgtctggtgtcc 222  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  11203109 agcaccgacacttctgatcgaaggtgtgtccggtgtcc 11203072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 29200797 - 29200838
Alignment:
Q  253 aacgacaccaacacatgtgattactttcaattatttcatatt 294  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  29200797 aacgacaccaacacatgtgattacattcaattatgtcatatt 29200838  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 30923293 - 30923339
Alignment:
Q  185 agcaccaacacttctgatcgaaggtgtgtctggtgtccggcatatgt 231  Q
    |||| |||||||| ||||||||||||||||| ||||||| |||||||    
T  30923293 agcaacaacacttttgatcgaaggtgtgtcttgtgtccgacatatgt 30923339  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 39828522 - 39828486
Alignment:
Q  258 caccaacacatgtgattactttcaattatttcatatt 294  Q
    |||||||||||||| |||| |||||||||||||||||    
T  39828522 caccaacacatgtggttacattcaattatttcatatt 39828486  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 12651095 - 12651062
Alignment:
Q  253 aacgacaccaacacatgtgattactttcaattat 286  Q
    |||||||||||||||||||||||| |||||||||    
T  12651095 aacgacaccaacacatgtgattacattcaattat 12651062  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 39765629 - 39765593
Alignment:
Q  184 tagcaccaacacttctgatcgaaggtgtgtctggtgt 220  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  39765629 tagcaccaacacttccgatcgaaggcgtgtctggtgt 39765593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 8204107 - 8204054
Alignment:
Q  184 tagcaccaacacttctgatcgaaggtgtgtctggtgtccggcatatgttagtgt 237  Q
    |||||| | |||||||||| | |||||||||||||||||||||| ||| |||||    
T  8204107 tagcactagcacttctgattggaggtgtgtctggtgtccggcatgtgtcagtgt 8204054  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 11777365 - 11777401
Alignment:
Q  187 caccaacacttctgatcgaaggtgtgtctggtgtccg 223  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  11777365 caccaacacttctgattgaaggtgtgtcaggtgtccg 11777401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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