View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_high_5 (Length: 608)
Name: NF13076_high_5
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 131 - 590
Target Start/End: Complemental strand, 35966391 - 35965938
Alignment:
| Q |
131 |
agatgaataagttggatgtctgagattgaaaccccgatctctgtatgtattatgcattgttccccactaactaaattaagtttacatgaccgaagcaaat |
230 |
Q |
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| T |
35966391 |
agatgaataagttaagtgtctaagattgaaaccccgatctctgcatatattatacattgt-ccatagtaactgaactaagtttacatgaacgaagtaaat |
35966293 |
T |
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| Q |
231 |
aaatacttaacttagaaacaaggaatcaataatagttaaatagtttgatataacaccaacaaactcaataaaatgtcatcaaatcttagagtcaattcaa |
330 |
Q |
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| T |
35966292 |
aaatacttaatttagaaacaaggaatcaataataattaaatagtttgatatgacaccaacaaactcaataaaatgtcatcaaatcttagagtcaattcaa |
35966193 |
T |
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| Q |
331 |
tcgtatacacatgagataatacaacaacaaatatagtggcaagtgttgagcaaatatagtaatgcttcaccaattattattttttgaatggataagggtt |
430 |
Q |
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| T |
35966192 |
tcgtatacacatgagataatacaacaacaaatatagtggc-agtgttgagcaaatatagtaa-----gaccaattattattttttgaatggataagggtt |
35966099 |
T |
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| Q |
431 |
ctcttcttcgttgttctataataaatagatgcattgaatgaggcattacttctaaataatgaggtttggatgttttagggcaggttcccattcaaggtat |
530 |
Q |
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| T |
35966098 |
ctcttcttcgtcgttctataataaatagatgcattgaatgaggcattacttctaaataatggggtttggatgttttagggcaggttcccattcaaggtat |
35965999 |
T |
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| Q |
531 |
cgtcttctcattta-ttgatcattattctccatgaccagttgaatttgctagtggtccttc |
590 |
Q |
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| T |
35965998 |
cgtcttctcatttatttgatcattattctccatgaccagttgaatttgctagtggtccttc |
35965938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 35966503 - 35966444
Alignment:
| Q |
12 |
atgaagaataaagattaattcagttgataaaatgttgatttatccacaaatatgaaaatg |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35966503 |
atgaagaataaagattaattcagttgataaaatgttgatttacccacaaatatgaaaatg |
35966444 |
T |
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