View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_high_8 (Length: 522)
Name: NF13076_high_8
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_high_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 10 - 507
Target Start/End: Original strand, 11087785 - 11088282
Alignment:
| Q |
10 |
attattctccaagttaaatggggaacaataaaaataaatgtctctaattatgtccttaattgttagaaagactaaaactagagatcaaatttttgttgca |
109 |
Q |
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| T |
11087785 |
attattctccaagttaaatggggaacaataaaaataaatgtctctaattatgtccttaattgttagaaagactaaaactagagatcaaatttttgttgca |
11087884 |
T |
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| Q |
110 |
actttgttatataatgattaaactttttgtggtagtgatagtttatgttgcaatccttgatattactaaaatttaggataatcaagattgtagtccattg |
209 |
Q |
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| T |
11087885 |
actttgttatataatgattaaactttttgtggtagtgatagtttattttgcaatccttgatattactaaaatttaggataatcaagattgtagtccattg |
11087984 |
T |
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| Q |
210 |
agccactaaaatttaggatagtttatgtaaggtctcaaaaacttgtcacacttgcaccaaattctatatactataatatgaaacattgaatctaataata |
309 |
Q |
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| T |
11087985 |
agccactaaaatttaggatagtttatgtaaggtctcaaaaacttgtcacacttgcaacaaattctatatactataatatgaaacattgaatctaataata |
11088084 |
T |
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| Q |
310 |
gatgttaagtttatacctccattgagccaaagaagaagaggcaatgtttctttagaatgatgagcttccacaaagtaatagtaaaaagcacttcctgcta |
409 |
Q |
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| T |
11088085 |
gatgttaagtttatacctccattgagccaaagaagaagaggcaatgtttctttagaatgatgagcttccacaaagtaatagtaaaaagcacttcctgcta |
11088184 |
T |
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| Q |
410 |
ttttgtcaattgtaacataccctccatattgagagaatttcacatttggttgccctggtagcttctcaatcttgtctttctctttcataccatcttga |
507 |
Q |
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| T |
11088185 |
ttttgtcaattgtaacataccctccatattgagagaatttcacatttggttgacctggtagcttctcaattttgtctttctctttcataccatcttga |
11088282 |
T |
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Target: scaffold0003 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 323 - 507
Target Start/End: Original strand, 317885 - 318069
Alignment:
| Q |
323 |
tacctccattgagccaaagaagaagaggcaatgtttctttagaatgatgagcttccacaaagtaatagtaaaaagcacttcctgctattttgtcaattgt |
422 |
Q |
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||||||||||||||||||||||||| || | ||||||||||||||| |||||||| ||||||||||||||||| || || || | | ||| || | | | |
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| T |
317885 |
tacctccattgagccaaagaagaaggggaagtgtttctttagaatgttgagcttcaacaaagtaatagtaaaaggctctaccacccaatttatccaattt |
317984 |
T |
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| Q |
423 |
aacataccctccatattgagagaatttcacatttggttgccctggtagcttctcaatcttgtctttctctttcataccatcttga |
507 |
Q |
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| T |
317985 |
gacataccctccaaattgagagaatttcaccaatggttgccctggaagactcttaatcctatctttctctttgagaccctcttga |
318069 |
T |
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