View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_high_9 (Length: 501)
Name: NF13076_high_9
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 480
Target Start/End: Complemental strand, 12798723 - 12798256
Alignment:
| Q |
13 |
aggagcacagatttgctactaagatttcgttcattgaaataaaacaaaaaccctcttgattgattacatgcaatacatgatatttttatttgtcaaggat |
112 |
Q |
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| T |
12798723 |
aggaccacagatttgctactaagatttcgttcattgaaataaaacaaaaaccctcttgattgattacacgcaatacatgatatttttatttgtcaaggat |
12798624 |
T |
|
| Q |
113 |
caaggtagaatcatcaacaacctcactaaaaacaaatgctagctaacaattaggtgttgtaaattaattgtatataaggagtttggaccttgctaacatt |
212 |
Q |
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| T |
12798623 |
caaggtagaatcatcaacaacctcactaaaaacaaatgctagctaacaattaggtgttgtaaattaattgtatataaggagtttggaccttgctaacatt |
12798524 |
T |
|
| Q |
213 |
gaccacattatttattctttagtgtatgaatacattttcaatgatggatcacagtagggtgacaaatataagaattaagaatactctagctgtccagcag |
312 |
Q |
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| T |
12798523 |
gaccacattatttattctttagtgtatgaatacattttcaatgatggatcacagtagggtgacaaatataagaattaagaatactctagctgtccagcag |
12798424 |
T |
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| Q |
313 |
atgagtttagtagttgttgctagaaacctgtgatacagatattgggtggaaaacgtgcgtcaccctgtagtttctaatttactatggtgttgggtcttct |
412 |
Q |
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|||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| ||| ||| |||||||||| || |||||| |||||||||||| |
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| T |
12798423 |
atgagtttagtagttgttactagaaagctatgatacagatattggatggaaaacgtgcctcatcctatagtttctaaatttctatggcgttgggtcttct |
12798324 |
T |
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| Q |
413 |
aagtaaaacttaattagtagtttcaaggacaataatacgtatagactgtggtttaatttgaactctag |
480 |
Q |
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||||||||||||||||||||||| ||||||||||||| | | ||| |||||||| ||||||||||||| |
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| T |
12798323 |
aagtaaaacttaattagtagttttaaggacaataatatgcagagattgtggttttatttgaactctag |
12798256 |
T |
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