View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_10 (Length: 498)
Name: NF13076_low_10
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 41826709 - 41827044
Alignment:
| Q |
1 |
agaatcatacgtaataatgagagtttacactatcaatcaatcataaccgttagatcattgaaaacgttcaactttttatcataatgttttaaaatcaaac |
100 |
Q |
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| T |
41826709 |
agaatcatacgtaataatgagagtttacactatcaatcaatcataatcgttagatcattgaaaacattcaactttttatcataatgttttaaaatcaaac |
41826808 |
T |
|
| Q |
101 |
atgagattggttgtgacgtgctaacagtccaaacttttttacacttacagtaaattaaactctaatttaattacttaacatcaccaatata-ttagatta |
199 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41826809 |
atgtgattggttgtgacgtgctaacagtccaaactcttttacacttacagtaaattaaactctaatttaattacttaacatcaccaatatatttagatta |
41826908 |
T |
|
| Q |
200 |
agcaaaattgaaattaccaaaaggaaatatggtggtggacatggtaagaaggaggaaaggtttgcgaccatgatcatctgaaagctggcccaaaagtgga |
299 |
Q |
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| T |
41826909 |
agcaaaattgaaattaccaaaaggaaatatggtggtggacatggtaagaaggaggaaaggtttgcgaccatgatcatctgaaagctggcccaaaagtgga |
41827008 |
T |
|
| Q |
300 |
agtaccatcatcttgaaaattccagcaatctagaag |
335 |
Q |
| |
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| T |
41827009 |
agtaccatcatcttgaaaattccagcaatctagaag |
41827044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 377 - 483
Target Start/End: Original strand, 41827086 - 41827192
Alignment:
| Q |
377 |
gttggttgatcgtatgaatttgtgataatacatactgtttcttgaaggccattaatgtaaatggctttggaacaagatgattgttgaggacataaagcag |
476 |
Q |
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| T |
41827086 |
gttggttgatcatatgaatttgtgataatacatactgtttcttgaaggccattaatgtaaatggctttggaacaagatgattgttgaggacataaagcag |
41827185 |
T |
|
| Q |
477 |
tggttgt |
483 |
Q |
| |
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||||||| |
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| T |
41827186 |
tggttgt |
41827192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 41820181 - 41820312
Alignment:
| Q |
204 |
aaattgaaattaccaaaaggaaatatggtggtggacatggtaagaaggaggaaaggtttgcgaccatgatcatctgaaagctggcccaaaagtggaagta |
303 |
Q |
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|||||| ||||||||||||| | ||| ||||||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| ||||| | |
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| T |
41820181 |
aaattgtaattaccaaaaggtattatactggtggatatggtaagaaggagtaaaggtttgcgaccgtgttcatctgaaagctgacccaaaaggggaagca |
41820280 |
T |
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| Q |
304 |
ccatcatcttgaaaattccagcaatctagaag |
335 |
Q |
| |
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|| ||||||||||||||||| |||||||||| |
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| T |
41820281 |
ccgccatcttgaaaattccagtaatctagaag |
41820312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 41820402 - 41820487
Alignment:
| Q |
398 |
gtgataatacatactgtttcttgaaggccattaatgtaaatggctttggaacaagatgattgttgaggacataaagcagtggttgt |
483 |
Q |
| |
|
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| T |
41820402 |
gtgataatacatactgtttgttgaaggccattgatgtaaatagctttggagcaagatgattgttgagggcataaagcagtggttgt |
41820487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 41820095 - 41820138
Alignment:
| Q |
164 |
aatttaattacttaacatcaccaatatattagattaagcaaaat |
207 |
Q |
| |
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| T |
41820095 |
aatttaattacttagcatcaccaacatattagattaaccaaaat |
41820138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 4076104 - 4076065
Alignment:
| Q |
24 |
tttacactatcaatcaatcataaccgttagatcattgaaa |
63 |
Q |
| |
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| T |
4076104 |
tttacactatcaatcaatcataatcgttagatcattgaaa |
4076065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 33657402 - 33657439
Alignment:
| Q |
27 |
acactatcaatcaatcataaccgttagatcattgaaaa |
64 |
Q |
| |
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| T |
33657402 |
acactatcaatcaatcataaccgtcaaatcattgaaaa |
33657439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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